RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SYNPRQ8TBG9 265 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 TMEM158Q8WZ71 300 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 HDAC2Q92769 488 aaKnown RBP16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 RDH5Q92781 318 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 ANKRD19PQ9H560 264 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 CCNB1IP1Q9NPC3 277 aa16.37■□□□□ 0.21
CCDC28A-203ENST00000617445 IGLV3-9A0A075B6K5 115 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 A0A1W2PPW3 197 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 A6NIZ1 184 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 ZNF682O95780 498 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 SAGP10523 405 aaPredicted RBP16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 ACHEP22303 614 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 IGFBP5P24593 272 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 ALDH3B1P43353 468 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 SLC7A2P52569 658 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 TMEM33P57088 247 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 KLF3P57682 345 aaPredicted RBP16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 RAP1BP61224 184 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 RAP1AP62834 184 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 FAM27BQ5VT28 67 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 C8orf82Q6P1X6 216 aaPredicted RBP16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 FKBP9P1Q75LS8 142 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 VTCN1Q7Z7D3 282 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 OAFQ86UD1 273 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 LRP11Q86VZ4 500 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 ACOT11Q8WXI4 607 aaPredicted RBP16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 CMTM5Q96DZ9 223 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 MAN2C1Q9NTJ4 1040 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 UGT2A1Q9Y4X1 527 aa16.36■□□□□ 0.21
CCDC28A-203ENST00000617445 NME4O00746 187 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 PIP5K1CO60331 668 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 SLC2A10O95528 541 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 LCKP06239 509 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 FAM157BP0CG42 384 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 SRD5A1P18405 259 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 APEX1P27695 318 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 SEC24CP53992 1094 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 CTXN1P60606 82 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 NKPD1Q17RQ9 610 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 PCGF3Q3KNV8 242 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 PABPC1L2AQ5JQF8 200 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 ELFN2Q5R3F8 820 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 FAM120AOSQ5T036 256 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 SLC25A47Q6Q0C1 308 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 RRM2BQ7LG56 351 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 CYP4Z1Q86W10 505 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 NRMQ8IXM6 262 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 ALDH16A1Q8IZ83 802 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 PAQR4Q8N4S7 273 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 LINC01356Q8N9X3 169 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 FAM156AQ8NDB6 213 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 SNX33Q8WV41 574 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 NABP1Q96AH0 204 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 C1orf159Q96HA4 380 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 WACQ9BTA9 647 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 NDEL1Q9GZM8 345 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 FZR1Q9UM11 496 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 SNX13Q9Y5W8 968 aa16.35■□□□□ 0.21
CCDC28A-203ENST00000617445 LRP5LA4QPB2 252 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 RNF212BA8MTL3 300 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 EFCAB9A8MZ26 197 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 FFAR1O14842 300 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 MT-ND5P03915 603 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 CCL2P13500 99 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 MAKP20794 623 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 STOMP27105 288 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 YAP1P46937 504 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 GSK3BP49841 420 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 PCBD1P61457 104 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 SGCAQ16586 387 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 TMEM154Q6P9G4 183 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 ZNF730Q6ZMV8 503 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 TMPRSS11FQ6ZWK6 438 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 MBOAT2Q6ZWT7 520 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 LRRC75AQ8NAA5 344 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 SNX18Q96RF0 628 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 ZNF416Q9BWM5 594 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 HINT3Q9NQE9 182 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 NKIRAS2Q9NYR9 191 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 TAAR3PQ9P1P4 343 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 MYEF2Q9P2K5 600 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 RHCGQ9UBD6 479 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 EIF3KQ9UBQ5 218 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 RPS6KA6Q9UK32 745 aa16.34■□□□□ 0.21
CCDC28A-203ENST00000617445 A0A087WUU8 490 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 C17orf100A8MU93 164 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 AHCYL1O43865 530 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 SERPINA1P01009 418 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 HPXP02790 462 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 CST2P09228 141 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 NAT2P11245 290 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 TCN1P20061 433 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 PCMT1P22061 227 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 CDAP32320 146 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 GPR6P46095 362 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 NUDT2P50583 147 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 FMODQ06828 376 aa16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 TOP3AQ13472 1001 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 MAD2L1BPQ15013 274 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-203ENST00000617445 SYT9Q86SS6 491 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms