RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 SLC25A4P12235 298 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 CCR2P41597 374 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 LSSP48449 732 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 EMDP50402 254 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 MLF2Q15773 248 aaPredicted RBP11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 CYB5R2Q6BCY4 276 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 C5orf46Q6UWT4 87 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 DPY19L2P2Q6ZN68 376 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 NUBPLQ8TB37 319 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 EDAQ92838 391 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 RAB11FIP5Q9BXF6 653 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 SEC11CQ9BY50 192 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 S100PP25815 95 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 GPR143P51810 404 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 DPTQ07507 201 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 PPP1R1AQ13522 171 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 OR2G2Q8NGZ5 317 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 INTS12Q96CB8 462 aaKnown RBP11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 MENTQ9BUN1 341 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 RHOFQ9HBH0 211 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 SLC27A6Q9Y2P4 619 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 SPACA6W5XKT8 324 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 TRPM6Q9BX84 2022 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 TMEM235A6NFC5 223 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 M0R036 132 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 OR10H2O60403 315 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF432O94892 652 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 INHAP05111 366 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 F13BP05160 661 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 ABCD3P28288 659 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 PJVKQ0ZLH3 352 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 OR10K2Q6IF99 312 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 ULK3Q6PHR2 472 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 KIRREL2Q6UWL6 708 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 FOXRED2Q8IWF2 684 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 GAL3ST3Q96A11 431 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 FOXN4Q96NZ1 517 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 DEFB118Q96PH6 123 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 SEMA6CQ9H3T2 930 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 MMP26Q9NRE1 261 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 GHRLQ9UBU3 117 aa11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 CARHSP1Q9Y2V2 147 aaKnown RBP11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 SNRNP200O75643 2136 aaKnown RBP11.66□□□□□ -0.54
SFSWAP-209ENST00000540469 CPED1A4D0V7 1026 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 CD80P33681 288 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 CTXN1P60606 82 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 CLINT1Q14677 625 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 ELAVL1Q15717 326 aaKnown RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 ERN2Q76MJ5 926 aaKnown RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 SLC16A9Q7RTY1 509 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 KREMEN2Q8NCW0 462 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 OR2L8Q8NGY9 312 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 PIK3IP1Q96FE7 263 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 TCEAL7Q9BRU2 100 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 EPHA6Q9UF33 1036 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 CGGBP1Q9UFW8 167 aaPredicted RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 C19orf53Q9UNZ5 99 aaPredicted RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 EIF1AYO14602 144 aaKnown RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 P2RX6O15547 441 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 SNRNP70P08621 437 aaKnown RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 SFTA3P0C7M3 94 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 PSMB6P28072 239 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 EIF1AXP47813 144 aaKnown RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNHIT3Q15649 155 aaPredicted RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 ITPRIPL2Q3MIP1 535 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 ACBD4Q8NC06 268 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 GPX8Q8TED1 209 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 LCN9Q8WX39 176 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 SEH1LQ96EE3 360 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 CST11Q9H112 138 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 DUSP22Q9NRW4 184 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 TMEM212A6NML5 194 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 C1QTNF3-AMACRE9PGA6 284 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 CD2P06729 351 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 SELLP14151 372 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 PGDP52209 483 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 ELOCQ15369 112 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 GLYATL3Q5SZD4 288 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 PAPD4Q6PIY7 484 aaKnown RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 LRRC69Q6ZNQ3 347 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 LYG2Q86SG7 212 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 PARGQ86W56 976 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 ZNF761Q86XN6 746 aaPredicted RBP11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 SLC39A11Q8N1S5 342 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 TMEM229BQ8NBD8 167 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 MFSD9Q8NBP5 474 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 LRFN5Q96NI6 719 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 NRIP2Q9BQI9 281 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 SULT4A1Q9BR01 284 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 RNF208Q9H0X6 261 aa11.65□□□□□ -0.54
SFSWAP-209ENST00000540469 CACNA1IQ9P0X4 2223 aa11.65□□□□□ -0.55
SFSWAP-209ENST00000540469 A0A1B0GTQ1 180 aa11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 EIF1BO60739 113 aaKnown RBP11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 MED6O75586 246 aa11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 NME2P22392 152 aa11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 EIF1P41567 113 aaKnown RBP11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 CDKN2AP42771 156 aaKnown RBP11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 SQSTM1Q13501 440 aa11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 HABP2Q14520 560 aaPredicted RBP11.64□□□□□ -0.55
SFSWAP-209ENST00000540469 SLC35D2Q76EJ3 337 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 171.2 ms