RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TMEM43Q9BTV4 400 aa17.1■□□□□ 0.33
SQSTM1-215ENST00000514093 MMP27Q9H306 513 aa17.1■□□□□ 0.33
SQSTM1-215ENST00000514093 RMND5AQ9H871 391 aa17.1■□□□□ 0.33
SQSTM1-215ENST00000514093 TMEM106BQ9NUM4 274 aa17.1■□□□□ 0.33
SQSTM1-215ENST00000514093 TANC2Q9HCD6 1990 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 CLIC1O00299 241 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 BIRC5O15392 142 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 STOMP27105 288 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 KRTAP10-3P60369 221 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 PAX8Q06710 450 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 STX3Q13277 289 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 NXNQ6DKJ4 435 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 SPICQ8N5J4 248 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 HIPK4Q8NE63 616 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 CITED1Q99966 193 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 BEX1Q9HBH7 125 aa17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 EIF3KQ9UBQ5 218 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-215ENST00000514093 C5orf49A4QMS7 147 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 M0QZ24 198 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 CH25HO95992 272 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 MT-ATP6P00846 226 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 ADH4P08319 380 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 RAG2P55895 527 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 CLRN1P58418 232 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 TNFAIP6P98066 277 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 ZMYND11Q15326 602 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 MBNL2Q5VZF2 373 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 C9orf139Q6ZV77 190 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 C10orf111Q8N326 155 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 OR9I1Q8NGQ6 314 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 POM121L2Q96KW2 1035 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 ARHGDIGQ99819 225 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 PAIP1Q9H074 479 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 CYSLTR2Q9NS75 346 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 OR5V1Q9UGF6 321 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 KLHL21Q9UJP4 597 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 TRIM33Q9UPN9 1127 aa17.08■□□□□ 0.32
SQSTM1-215ENST00000514093 LOC100509620A0A075B734 347 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 TRAV40A0A0B4J280 105 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 A8MXK9 166 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 BMP2P12643 396 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 CDAP32320 146 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 ZNF84P51523 738 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 RELBQ01201 579 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 DEFB112Q30KQ8 113 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 TMEM155Q4W5P6 130 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 ESCO2Q56NI9 601 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 OLFML2AQ68BL7 652 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 SLC2A7Q6PXP3 512 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 RFPL4BQ6ZWI9 263 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 LRRC28Q86X40 367 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 AKR7LQ8NHP1 331 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 ABHD4Q8TB40 342 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 ROPN1BQ9BZX4 212 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 ROPN1Q9HAT0 212 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 ZDHHC8Q9ULC8 765 aa17.07■□□□□ 0.32
SQSTM1-215ENST00000514093 F5H0A9 414 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 NGFP01138 241 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 IGHG1P01857 330 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 CD55P08174 381 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 KITP10721 976 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 IDO1P14902 403 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 ZNF32P17041 273 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 POLR2JP52435 117 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 PPP1CBP62140 327 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 BTG1P62324 171 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 BST1Q10588 318 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 FADDQ13158 208 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 ZNF74Q16587 644 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 FIP1L1Q6UN15 594 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 BRD3OSQ6XYD6 125 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 KRT73Q86Y46 540 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 OR4F5Q8NH21 305 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 GTF2H4Q92759 462 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 UBE2FQ969M7 185 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 ZDHHC16Q969W1 377 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 RBM4BQ9BQ04 359 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 SPATA5L1Q9BVQ7 753 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 CCNB1IP1Q9NPC3 277 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 C1RLQ9NZP8 487 aa17.06■□□□□ 0.32
SQSTM1-215ENST00000514093 A0A1B0GUS0 222 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 KPNA4O00629 521 aaPredicted RBP17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 MGRN1O60291 552 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 PLATP00750 562 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 CRYBA1P05813 215 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 AQP1P29972 269 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 LIPAP38571 399 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 GDI2P50395 445 aaKnown RBP17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 CDK6Q00534 326 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 HIST3H3Q16695 136 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 NRN1LQ496H8 165 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 ZNF362Q5T0B9 420 aaPredicted RBP17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 GCNT6Q5T4J0 391 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 ASPHD2Q6ICH7 369 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 REEP3Q6NUK4 255 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 LINC00114Q6XXX2 140 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 KIRREL3Q8IZU9 778 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 ZNF283Q8N7M2 679 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 KCNN2Q9H2S1 579 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 RAD21L1Q9H4I0 556 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms