RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 RASL10BQ96S79 203 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 HES7Q9BYE0 225 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 AUNIPQ9H7T9 357 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 CNIH4Q9P003 139 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SPTAN1Q13813 2472 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 PCNX3Q9H6A9 2034 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 EML6Q6ZMW3 1958 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 MPDZO75970 2070 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 A0A1B0GVI7 797 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 RPS10-NUDT3A0A1W2PQS6 291 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 H3BML4 177 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 HCN1O60741 890 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 SOX30O94993 753 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 NKX2-2O95096 273 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 NR2C1P13056 603 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 PPT1P50897 306 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ARG2P78540 354 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 SORDQ00796 357 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 PLA2G7Q13093 441 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 DCAF10Q5QP82 559 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 OLFML2AQ68BL7 652 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC30A6Q6NXT4 461 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 UNQ6126/PRO20091Q6UXV3 157 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 APOOLQ6UXV4 268 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ZER1Q7Z7L7 766 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 GPAT4Q86UL3 456 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 FOXRED2Q8IWF2 684 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 BEST3Q8N1M1 668 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 OR51L1Q8NGJ5 315 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 SPOCK3Q9BQ16 436 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 KLHDC3Q9BQ90 382 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 EXO5Q9H790 373 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 WDR54Q9H977 334 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ASCL3Q9NQ33 180 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 BIN3Q9NQY0 253 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 PPP4R1LQ9P1A2 415 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 GTF2A1LQ9UNN4 478 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ATMQ13315 3056 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 IGLV3-12A0A075B6K2 115 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ZZEF1O43149 2961 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 LALBAP00709 142 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 IGKV3-11P04433 115 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ADRB1P08588 477 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ZP3P21754 424 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 SSR4P51571 173 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 LIMK1P53667 647 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 CTAG1AP78358 180 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 FLI1Q01543 452 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 TAF13Q15543 124 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 CEBPEQ15744 281 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 MICAQ29983 383 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 GLYR1Q49A26 553 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 LIN54Q6MZP7 749 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 FIP1L1Q6UN15 594 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 TMEM91Q6ZNR0 172 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 Q6ZTK2 550 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 OR4K17Q8NGC6 315 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 FGF11Q92914 225 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 SEC22AQ96IW7 307 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 RTN4RQ9BZR6 473 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 ESRP2Q9H6T0 727 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 EGLN3Q9H6Z9 239 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 UBQLN4Q9NRR5 601 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC7A7Q9UM01 511 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 KCNMB2Q9Y691 235 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 CDH10Q9Y6N8 788 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 A3GALT2U3KPV4 340 aa7.85□□□□□ -1.15
LIMCH1-209ENST00000509277 KRBOX1C9JBD0 128 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNHIT1O43257 154 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 PRKYO43930 277 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SERPINA3P01011 423 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 EIF4EP06730 217 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 DBIP07108 87 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 CD63P08962 238 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SAGP10523 405 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 GCGRP47871 477 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 CASP6P55212 293 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 IGLV3-21P80748 117 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ALKBH1Q13686 389 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SGCAQ16586 387 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ENTPD8Q5MY95 495 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 RPTNQ6XPR3 784 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 LRRTM1Q86UE6 522 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 CCDC36Q8IYA8 594 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 OR13C5Q8NGS8 318 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 OR2T4Q8NH00 348 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 PTP4A1Q93096 173 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF354BQ96LW1 612 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 GNRHR2Q96P88 292 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 PARP12Q9H0J9 701 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 TMEM27Q9HBJ8 222 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF71Q9NQZ8 489 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 AK6Q9Y3D8 172 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 A0A1B0GV90 55 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 FAM166BA8MTA8 275 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 LRRN3E7EW58 273 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 J3QLW9 94 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SOCS6O14544 535 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 GOSR2O14653 212 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 AKR7A3O95154 331 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms