RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PRRC1Q96M27 445 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 C19orf24Q9BVV8 132 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 ZNF416Q9BWM5 594 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 RACGAP1Q9H0H5 632 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 KCNN2Q9H2S1 579 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 OR51B6Q9H340 312 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 TXNIPQ9H3M7 391 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 HINT3Q9NQE9 182 aaKnown RBP14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 ZNF275Q9NSD4 429 aaPredicted RBP14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 SLCO1C1Q9NYB5 712 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 HIF3AQ9Y2N7 669 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 UGT2A1Q9Y4X1 527 aa14.18□□□□□ -0.14
CCDC28B-204ENST00000469003 GMNCA6NCL1 334 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 C17orf100A8MU93 164 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 PIP5K1CO60331 668 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 RP2O75695 350 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 SLC2A10O95528 541 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 TFP02787 698 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 SAGP10523 405 aaPredicted RBP14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 NR2C1P13056 603 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 IFNA8P32881 189 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 APLNRP35414 380 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 MAGEB1P43366 347 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 ERVS71-1P61550 626 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 SELENOWP63302 87 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 SRSF2Q01130 221 aaKnown RBP14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 SF3A3Q12874 501 aaKnown RBP eCLIP14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 ALG10Q5BKT4 473 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 PABPC1L2AQ5JQF8 200 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 TMEM154Q6P9G4 183 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 SNX33Q8WV41 574 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 NABP1Q96AH0 204 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 TSPAN32Q96QS1 320 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 ALG12Q9BV10 488 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 CCNB1IP1Q9NPC3 277 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 A4GNTQ9UNA3 340 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 AP3M1Q9Y2T2 418 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 CAPN7Q9Y6W3 813 aa14.17□□□□□ -0.14
CCDC28B-204ENST00000469003 IGKV1D-43A0A0B4J1Z2 117 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 ELOVL7A1L3X0 281 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 SLC22A2O15244 555 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 PPIHO43447 177 aaKnown RBP14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 IGHMP01871 453 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 IFI30P13284 250 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 CDAP32320 146 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 SRP14P37108 136 aaKnown RBP14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 FMODQ06828 376 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 CD47Q08722 323 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 MOGQ16653 247 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 PCGF3Q3KNV8 242 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 LIPNQ5VXI9 398 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 SLC25A47Q6Q0C1 308 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 GLCCI1Q86VQ1 547 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 RFLNBQ8N5W9 214 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 CPEB3Q8NE35 698 aaKnown RBP14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 LZICQ8WZA0 190 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 BPIFA2Q96DR5 249 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 NARFLQ9H6Q4 476 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 NKIRAS2Q9NYR9 191 aa14.16□□□□□ -0.14
CCDC28B-204ENST00000469003 IGHV3-13P01766 116 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 ZNF32P17041 273 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 STOMP27105 288 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 RPL27P61353 136 aaKnown RBP14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 TOP3AQ13472 1001 aaPredicted RBP14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 SGCAQ16586 387 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 ARPINQ7Z6K5 226 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 OFCC1Q8IZS5 231 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 ICA1LQ8NDH6 482 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 OR1J1Q8NGS3 322 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 FNDC8Q8TC99 324 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 NSMAFQ92636 917 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 RCN3Q96D15 328 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 CMTM6Q9NX76 183 aa14.15□□□□□ -0.14
CCDC28B-204ENST00000469003 FAM157AC9JC47 383 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 WNT9BO14905 357 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 MT-ND5P03915 603 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 GAAP10253 952 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 DRD4P21917 467 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 CCNOP22674 350 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 CTXN1P60606 82 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 CCL8P80075 99 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 TEKQ02763 1124 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 THEM4Q5T1C6 240 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 FAM27BQ5VT28 67 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 FAM205BPQ63HN1 556 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 RINLQ6ZS11 566 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 POU5F2Q8N7G0 328 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 LRRC75AQ8NAA5 344 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 AKR7LQ8NHP1 331 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 TMEM186Q96B77 213 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 POM121L2Q96KW2 1035 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 RBP7Q96R05 134 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 FNDC11Q9BVV2 318 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 MAN2C1Q9NTJ4 1040 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 TREM2Q9NZC2 230 aa14.14□□□□□ -0.15
CCDC28B-204ENST00000469003 LOC100509620A0A075B734 347 aa14.13□□□□□ -0.15
CCDC28B-204ENST00000469003 TCF21O43680 179 aa14.13□□□□□ -0.15
CCDC28B-204ENST00000469003 CDC14BO60729 498 aa14.13□□□□□ -0.15
CCDC28B-204ENST00000469003 IFNW1P05000 195 aa14.13□□□□□ -0.15
CCDC28B-204ENST00000469003 MSMBP08118 114 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms