RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZIM3Q96PE6 472 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZNF768Q9H5H4 540 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 NOX4Q9NPH5 578 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 C11orf16Q9NQ32 467 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ASB4Q9Y574 426 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR2M5A3KFT3 312 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 BHLHE40O14503 412 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TP73O15350 636 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 SYNGR3O43761 229 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 PSPNO60542 156 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR2J2O76002 312 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 NDUFB8O95169 186 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 CST1P01037 141 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 IL5P05113 134 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 GPR12P47775 334 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 LHX2P50458 406 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 CDH12P55289 794 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TAS2R30P59541 319 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 RPL23AP62750 156 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 SEMA3BQ13214 749 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 SNTB1Q13884 538 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 RPEL1Q2QD12 228 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 ZBED5Q49AG3 693 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 PLAG1Q6DJT9 500 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 FBXW12Q6X9E4 464 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 TMPRSS11FQ6ZWK6 438 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 VTCN1Q7Z7D3 282 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 LRRC56Q8IYG6 542 aaPredicted RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR8H2Q8N162 312 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR5W2Q8NH69 310 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 C11orf24Q96F05 449 aaPredicted RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 OXGR1Q96P68 337 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 MKRN2Q9H000 416 aaKnown RBP3.72□□□□□ -1.81
USH2A-202ENST00000366942 EDA2RQ9HAV5 297 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 HHLA2Q9UM44 414 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OARD1Q9Y530 152 aa3.72□□□□□ -1.81
USH2A-202ENST00000366942 OR7C1O76099 320 aaPredicted RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 CH25HO95992 272 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 NRASP01111 189 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 HRASP01112 189 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 PDGFBP01127 241 aaPredicted RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 FSHBP01225 129 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 IFNA7P01567 189 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 CELA3AP09093 270 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 MYOD1P15172 320 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 PRKACAP17612 351 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 ETV6P41212 452 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 GABRA4P48169 554 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 GBE1Q04446 702 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 AKR1C1Q04828 323 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 LTC4SQ16873 150 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 ZNF789Q5FWF6 425 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 TNFAIP8L3Q5GJ75 292 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 DMRTC1Q5HYR2 192 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 TMEM107Q6UX40 140 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 NPSR1Q6W5P4 371 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 MAMSTRQ6ZN01 415 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 CALHM1Q8IU99 346 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 FBXL16Q8N461 479 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 SYT14Q8NB59 555 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 ADAMTS16Q8TE57 1224 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 ACOT11Q8WXI4 607 aaPredicted RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 IMP4Q96G21 291 aaKnown RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 SLC39A13Q96H72 371 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 TMEM19Q96HH6 336 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 TMEM109Q9BVC6 243 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 ZNF471Q9BX82 626 aaPredicted RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 OR11A1Q9GZK7 315 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 SLA2Q9H6Q3 261 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 AAMDCQ9H7C9 122 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 SPAG4Q9NPE6 437 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 BIN3Q9NQY0 253 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 AASSQ9UDR5 926 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 STOML2Q9UJZ1 356 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 ZNF337Q9Y3M9 751 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 CCL27Q9Y4X3 112 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 CACNA1HO95180 2353 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 IGKV6D-21A0A0A0MT36 114 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 A0A1W2PPV4 95 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 MAGEA13PA6NCF6 341 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 SERINC4A6NH21 518 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 RNF225M0QZC1 329 aaPredicted RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 NUPL2O15504 423 aaKnown RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 SSNA1O43805 119 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 OR2A4O95047 310 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 CERS1P27544 350 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 PSMB10P40306 273 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 AQP2P41181 271 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 AQP5P55064 265 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 FZD2Q14332 565 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.71□□□□□ -1.82
USH2A-202ENST00000366942 PRAMEF17Q5VTA0 474 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 TRMT10BQ6PF06 316 aaKnown RBP3.71□□□□□ -1.82
USH2A-202ENST00000366942 B3GLCTQ6Y288 498 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 SLCO4C1Q6ZQN7 724 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 HSD11B1LQ7Z5J1 315 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 LRRC57Q8N9N7 239 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 OR1S1Q8NH92 325 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 RHOXF1Q8NHV9 184 aa3.71□□□□□ -1.82
USH2A-202ENST00000366942 OR2A7Q96R45 310 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms