RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 NDUFAF7Q7L592 441 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 PLPP7Q8NBV4 271 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 EMC7Q9NPA0 242 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 AKAP7Q9P0M2 348 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 WNT16Q9UBV4 365 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 STEAP1Q9UHE8 339 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 TRBV11-1A0A0K0K1C0 115 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 FTCDNL1E5RQL4 147 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 MS4A18H0YCH9 400 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 H3BML4 177 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 ARPC1BO15143 372 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 OPN1LWP04000 364 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 RAF1P04049 648 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 ARRB1P49407 418 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 SLC26A5P58743 744 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 SQSTM1Q13501 440 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 MS4A18Q3C1V0 323 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 ASPHD2Q6ICH7 369 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 LYPD8Q6UX82 237 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 Q6ZTK2 550 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 LINC00346Q8IVM7 164 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 NFAM1Q8NET5 270 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 MED29Q9NX70 200 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 FBXL3Q9UKT7 428 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 SRPK3Q9UPE1 567 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 LRP12Q9Y561 859 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 CPAMD8Q8IZJ3 1885 aa16.49■□□□□ 0.23
SHKBP1-201ENST00000291842 CACNA1EQ15878 2313 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 COL6A3P12111 3177 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 PEX14O75381 377 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 ECDO95905 644 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 PUDPQ08623 228 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 HYAL4Q2M3T9 481 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 YOD1Q5VVQ6 348 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 PAPD4Q6PIY7 484 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 STK35Q8TDR2 534 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 RNF128Q8TEB7 428 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 GAL3ST1Q99999 423 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 ETV7Q9Y603 341 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 ANKRD20A5PA0PJZ0 165 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 MEIS3P1A6NDR6 274 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 ERVH48-1M5A8F1 160 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 OR2T1O43869 369 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 SCRG1O75711 98 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 CSRP1P21291 193 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 DHPSP49366 369 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 ZP1P60852 638 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 KIF26BQ2KJY2 2108 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 SLC25A25Q6KCM7 469 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 BIVMQ86UB2 503 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 ZNF248Q8NDW4 579 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 ASB17Q8WXJ9 295 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 TMEM234Q8WY98 164 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 HLA-CQ95604 372 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 SEC22CQ9BRL7 303 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 TGIF2Q9GZN2 237 aa16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 MRPL39Q9NYK5 338 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-201ENST00000291842 IGKV1D-43A0A0B4J1Z2 117 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 A0A1W2PQM1 296 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 TMEM200CA6NKL6 621 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 SULT1B1O43704 296 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 ALOX12BO75342 701 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 GLSO94925 669 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 KDM4BO94953 1096 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 POU3F4P49335 361 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 AP3S2P59780 193 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 CCL7P80098 99 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 POU3F1Q03052 451 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 GLO1Q04760 184 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 LINC00303Q3SY05 128 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 TEX30Q5JUR7 227 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 LCN10Q6JVE6 187 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 LUZP2Q86TE4 346 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 PIAS4Q8N2W9 510 aaPredicted RBP16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 MRI1Q9BV20 369 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 ACTR6Q9GZN1 396 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 PI4KAP42356 2102 aa16.47■□□□□ 0.23
SHKBP1-201ENST00000291842 ACOT7O00154 380 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 TOXO94900 526 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 SULT1A3P0DMM9 295 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 SULT1A4P0DMN0 295 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 RAD52P43351 418 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 SELENOPP49908 381 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 RIDAP52758 137 aaKnown RBP16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 RAG2P55895 527 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 GUCA2AQ02747 115 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 C17orf67Q0P5P2 114 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 FOXF1Q12946 379 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 CORO6Q6QEF8 472 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 TRAF4Q9BUZ4 470 aaPredicted RBP16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 EMC6Q9BV81 110 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 NOX3Q9HBY0 568 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 APMAPQ9HDC9 416 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 KLRF1Q9NZS2 232 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 RABL2AQ9UBK7 228 aaPredicted RBP16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 RABL2BQ9UNT1 228 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 EMC9Q9Y3B6 208 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 A0A1B0GTQ1 180 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 ANKUB1A6NFN9 424 aa16.46■□□□□ 0.23
SHKBP1-201ENST00000291842 NPIPA5E9PKD4 350 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms