RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OR8J3Q8NGG0 315 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 FGFBP3Q8TAT2 258 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 TMEM120AQ9BXJ8 343 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 MS4A5Q9H3V2 200 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 MEPEQ9NQ76 525 aaPredicted RBP14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 MRGBPQ9NV56 204 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 SLC7A8Q9UHI5 535 aa14.26□□□□□ -0.13
CCDC28B-204ENST00000469003 FXYD1O00168 92 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 FARS2O95363 451 aaKnown RBP14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 IGHG1P01857 330 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 QDPRP09417 244 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 H2AFXP16104 143 aaPredicted RBP14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 RABL3Q5HYI8 236 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 COQ5Q5HYK3 327 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 IL17RELQ6ZVW7 336 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 DPPA2Q7Z7J5 298 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 ZNF584Q8IVC4 421 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 LRRC58Q96CX6 371 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 ECSITQ9BQ95 431 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 SYT3Q9BQG1 590 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 POLR2J2Q9GZM3 115 aaKnown RBP14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 POLR2J3Q9H1A7 115 aaKnown RBP14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 BAG5Q9UL15 447 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 SH3GLB1Q9Y371 365 aa14.25□□□□□ -0.13
CCDC28B-204ENST00000469003 LYNX1G3V0Z9 82 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 BLOC1S5-TXNDC5H3BN57 136 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 NPPAP01160 153 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 IGF2P01344 180 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 MT-ND1P03886 318 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 LYNX1P0DP58 116 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 APEX1P27695 318 aaKnown RBP14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 IL2RGP31785 369 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 RBM34P42696 430 aaKnown RBP14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 ALDH3B1P43353 468 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 CLRN1P58418 232 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 RPL18Q07020 188 aaKnown RBP14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 HIST3H3Q16695 136 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 CR1LQ2VPA4 569 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 NRN1LQ496H8 165 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 TMEM53Q6P2H8 277 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 ERICH5Q6P6B1 374 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 LRP11Q86VZ4 500 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 SNX18Q96RF0 628 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 SH3GL3Q99963 347 aa14.24□□□□□ -0.13
CCDC28B-204ENST00000469003 A0A1W2PRG6 482 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 SLC22A23A1A5C7 686 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 BBIP1A8MTZ0 92 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 CENPBD1B2RD01 187 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 MRASO14807 208 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 OR7A10O76100 309 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 OR5F1O95221 314 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 TROVE2P10155 538 aaKnown RBP eCLIP14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 FUT1P19526 365 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 TNFRSF1BP20333 461 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 UGT2B15P54855 530 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 TAS2R41P59536 307 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 KLF10Q13118 480 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 TRIP10Q15642 601 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 MMEL1Q495T6 779 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 ELFN2Q5R3F8 820 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 REP15Q6BDI9 236 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 UGT2A3Q6UWM9 527 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 DEF8Q6ZN54 512 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 HDDC2Q7Z4H3 204 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 NKAIN4Q8IVV8 208 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 LINC01356Q8N9X3 169 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 SLC30A7Q8NEW0 376 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 NOXO1Q8NFA2 376 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 OR4K5Q8NGD3 323 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 PFN4Q8NHR9 129 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 TMEM255BQ8WV15 326 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 MCHR2Q969V1 340 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 SGTBQ96EQ0 304 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 C1orf159Q96HA4 380 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 ZNF583Q96ND8 569 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 SEPHS2Q99611 448 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 MRPL13Q9BYD1 178 aaKnown RBP14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 C1orf198Q9H425 327 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 RNF121Q9H920 327 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 MYEF2Q9P2K5 600 aaKnown RBP14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 RIMS3Q9UJD0 308 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 ZNF346Q9UL40 294 aaKnown RBP14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 FZR1Q9UM11 496 aa14.23□□□□□ -0.13
CCDC28B-204ENST00000469003 MCIDASD6RGH6 385 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 IFNA14P01570 189 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 HPXP02790 462 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 F13BP05160 661 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 TCN1P20061 433 aaPredicted RBP14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 ACHEP22303 614 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 DAP3P51398 398 aaKnown RBP14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 ZNF84P51523 738 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 ARFIP2P53365 341 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 SEC24CP53992 1094 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 CDH15P55291 814 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 RUNX1T1Q06455 604 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 MAD2L1BPQ15013 274 aaPredicted RBP14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 MAPRE2Q15555 327 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 KRTAP24-1Q3LI83 254 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 SLC36A2Q495M3 483 aa14.22□□□□□ -0.13
CCDC28B-204ENST00000469003 RGS7BPQ6MZT1 257 aaPredicted RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms