RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 C19orf57Q0VDD7 668 aa18.14■□□□□ 0.49
SHANK1-203ENST00000391813 SKA3Q8IX90 412 aa18.14■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF681Q96N22 645 aa18.14■□□□□ 0.49
SHANK1-203ENST00000391813 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.14■□□□□ 0.49
SHANK1-203ENST00000391813 ZMAT5Q9UDW3 170 aaKnown RBP18.14■□□□□ 0.49
SHANK1-203ENST00000391813 TIMM8BQ9Y5J9 83 aaPredicted RBP18.14■□□□□ 0.49
SHANK1-203ENST00000391813 COL24A1Q17RW2 1714 aa18.14■□□□□ 0.49
SHANK1-203ENST00000391813 LGALS8O00214 317 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 EPHA5P54756 1037 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 LTB4RQ15722 352 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 UBALD2Q8IYN6 164 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 FAM71CQ8NEG0 241 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 THAP10Q9P2Z0 257 aaPredicted RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 BLACEA4D250 179 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 OR2C1O95371 312 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 TSFMP43897 325 aaKnown RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 SLC6A12P48065 614 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 EFNA3P52797 238 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 REEP5Q00765 189 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 EXOSC6Q5RKV6 272 aaKnown RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 GLYATL3Q5SZD4 288 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 TIMM29Q9BSF4 260 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 OR10A5Q9H207 317 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 OR10A2Q9H208 303 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 DDX60LQ5H9U9 1706 aaKnown RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 MAGEB4O15481 346 aaPredicted RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 TK1P04183 234 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 GALP22466 123 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 ARL3P36405 182 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 PXNP49023 591 aaPredicted RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 EXOSC7Q15024 291 aaKnown RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 OR5M10Q6IEU7 315 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 GPR137CQ8N3F9 429 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF740Q8NDX6 193 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 RNF170Q96K19 258 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 CMSS1Q9BQ75 279 aaKnown RBP18.13■□□□□ 0.49
SHANK1-203ENST00000391813 RREB1Q92766 1687 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 MEIKINA0A087WXM9 373 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 A0A0U1RQK1 487 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 TRAPPC6AO75865 159 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 PRSS23O95084 383 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 NPPBP16860 134 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 GABRR1P24046 479 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 P2RY2P41231 377 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 TMEM88Q6PEY1 159 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 TMEM99Q8N816 258 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 HSD17B11Q8NBQ5 300 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 CRISPLD2Q9H0B8 497 aa18.13■□□□□ 0.49
SHANK1-203ENST00000391813 COL5A3P25940 1745 aaPredicted RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 A0A1W2PPV4 95 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 IFITM5A6NNB3 132 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 BRINP1O60477 761 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 LDB3O75112 727 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 CD63P08962 238 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 GLULP15104 373 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 HMGA1P17096 107 aaKnown RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 LAP3P28838 519 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 KIAA0907Q7Z7F0 614 aaPredicted RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 EDAQ92838 391 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 EXO1Q9UQ84 846 aaKnown RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 BCAT2O15382 392 aaPredicted RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 F13BP05160 661 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 PRPH2P23942 346 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 RBM39Q14498 530 aaKnown RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 DUSP18Q8NEJ0 188 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 NSA2O95478 260 aaKnown RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 SSBP1Q04837 148 aaKnown RBP18.12■□□□□ 0.49
SHANK1-203ENST00000391813 NSDHLQ15738 373 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 CMTM4Q8IZR5 234 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 OR9K2Q8NGE7 335 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 RSC1A1Q92681 617 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 CMTM3Q96MX0 182 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 MACROD1Q9BQ69 325 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 ASB1Q9Y576 335 aa18.12■□□□□ 0.49
SHANK1-203ENST00000391813 DFFBO76075 338 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 LCATP04180 440 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 IGFBP1P08833 259 aaPredicted RBP18.11■□□□□ 0.49
SHANK1-203ENST00000391813 RPP30P78346 268 aaKnown RBP18.11■□□□□ 0.49
SHANK1-203ENST00000391813 LPAL2Q16609 132 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 EEF1A1P5Q5VTE0 462 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 ZNF705AQ6ZN79 300 aaPredicted RBP18.11■□□□□ 0.49
SHANK1-203ENST00000391813 GLCCI1Q86VQ1 547 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 GABRG1Q8N1C3 465 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 UPRTQ96BW1 309 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 SGCZQ96LD1 299 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 CSAG2Q9Y5P2 127 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 OR52A4PA6NMU1 304 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 F5H5K5 113 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 MRPS34P82930 218 aaKnown RBP18.11■□□□□ 0.49
SHANK1-203ENST00000391813 C9orf50Q5SZB4 431 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 C5orf46Q6UWT4 87 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 MICAL3Q7RTP6 2002 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 MFSD9Q8NBP5 474 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 OR14L1PQ8NHC6 308 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 SGK3Q96BR1 496 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 SMIM19Q96E16 107 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 KCMF1Q9P0J7 381 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 OTUD1Q5VV17 481 aaPredicted RBP18.11■□□□□ 0.49
SHANK1-203ENST00000391813 AFMIDQ63HM1 303 aa18.11■□□□□ 0.49
SHANK1-203ENST00000391813 TMEM184AQ6ZMB5 413 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms