RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KRT33AO76009 404 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 CNOT4O95628 575 aaKnown RBP26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 POU1F1P28069 291 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 CSNK1A1P48729 337 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 RPS6KA3P51812 740 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 FAPQ12884 760 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 TRIP10Q15642 601 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 GPR139Q6DWJ6 353 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 GABRG1Q8N1C3 465 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 ARIH2OSQ8N7S6 290 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 TSSK6Q9BXA6 273 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 ASB6Q9NWX5 421 aa26.14■■□□□ 1.78
LIMCH1-211ENST00000509638 BHLHE40O14503 412 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 APEHP13798 732 aaKnown RBP26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 KRR1Q13601 381 aaKnown RBP26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 DAG1Q14118 895 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 MESTQ5EB52 335 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 C20orf196Q8IYI0 205 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 GPR137CQ8N3F9 429 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 OR6N1Q8NGY5 312 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 LINC00470Q9BZP3 86 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 DOPEY2Q9Y3R5 2298 aa26.13■■□□□ 1.77
LIMCH1-211ENST00000509638 A6NIZ1 184 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 M0R3G1 203 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 SOCS2O14508 198 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 TRMUO75648 421 aaKnown RBP26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 ALPLP05186 524 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 ACADSP16219 412 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 CLRN1P58418 232 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 RAP1BP61224 184 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 RAP1AP62834 184 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 IQCF1Q8N6M8 205 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 SYT14Q8NB59 555 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 OR2T33Q8NG76 320 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 HDAC2Q92769 488 aaKnown RBP26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 RNPEPL1Q9HAU8 725 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 NKX1-2Q9UD57 310 aaPredicted RBP26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 ZNF587BE7ETH6 402 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 XKRYO14609 159 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 GRNP28799 593 aaKnown RBP26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 NOS3P29474 1203 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 ALDH3A2P51648 485 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 PHYHD1Q5SRE7 291 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 LINGO2Q7L985 606 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 OR4Q3Q8NH05 313 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 RNASE6Q93091 150 aaKnown RBP26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 LRRC46Q96FV0 321 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 LRR1Q96L50 414 aa26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 MRPL13Q9BYD1 178 aaKnown RBP26.12■■□□□ 1.77
LIMCH1-211ENST00000509638 ANKHD1Q8IWZ3 2542 aaKnown RBP26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 H7C1C5 153 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 ARPC3O15145 178 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 TXNDC12O95881 172 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 PEX2P28328 305 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 LCN6P62502 163 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 CD47Q08722 323 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 CXorf67Q86X51 503 aaPredicted RBP26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 TMEM54Q969K7 222 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 KCNK17Q96T54 332 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 ULBP2Q9BZM5 246 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 USE1Q9NZ43 259 aa26.11■■□□□ 1.77
LIMCH1-211ENST00000509638 CENPBD1B2RD01 187 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 ARHGEF9O43307 516 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 COX5AP20674 150 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 IGHV1-2P23083 117 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 CD79BP40259 229 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 FOXG1P55316 489 aaPredicted RBP26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 ROR2Q01974 943 aaKnown RBP26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 ZBTB49Q6ZSB9 765 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 ABHD12BQ7Z5M8 362 aaPredicted RBP26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 CRLF2Q9HC73 371 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 B3GAT2Q9NPZ5 323 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 ELOVL5Q9NYP7 299 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 GLTPQ9NZD2 209 aa26.1■■□□□ 1.77
LIMCH1-211ENST00000509638 IMPA2O14732 288 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 CCKARP32238 428 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 FAM27E3Q08E93 113 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 P2RY6Q15077 328 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 LRRC36Q1X8D7 754 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 PGGHGQ32M88 737 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 SLC35F1Q5T1Q4 408 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 C9orf135Q5VTT2 229 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 LPCAT4Q643R3 524 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 SLC27A4Q6P1M0 643 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 ADCK1Q86TW2 530 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 LNX2Q8N448 690 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 ALG12Q9BV10 488 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 NPDC1Q9NQX5 325 aaPredicted RBP26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 ENOPH1Q9UHY7 261 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 ICE1Q9Y2F5 2266 aa26.09■■□□□ 1.77
LIMCH1-211ENST00000509638 IDH3BO43837 385 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 MGRN1O60291 552 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 LYZL6O75951 148 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 ITGA5P08648 1049 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 HIST1H1CP16403 213 aaKnown RBP26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 ESRRGP62508 458 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 MYBPC1Q00872 1141 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 STAC2Q6ZMT1 411 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 SLC29A1Q99808 456 aa26.08■■□□□ 1.77
LIMCH1-211ENST00000509638 GPR35Q9HC97 309 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms