RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 VIPR1P32241 457 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR1E2P47887 323 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 AKR1D1P51857 326 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CLRN1P58418 232 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 S100A10P60903 97 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 DEFA5Q01523 94 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ECH1Q13011 328 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PRDX4Q13162 271 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF141Q15928 474 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR7E24Q6IFN5 339 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 THSD4Q6ZMP0 1018 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 NDUFAF7Q7L592 441 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF611Q8N823 705 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF740Q8NDX6 193 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 SDR9C7Q8NEX9 313 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 OR13C8Q8NGS7 320 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 CCDC120Q96HB5 630 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 HHIPL1Q96JK4 782 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 MTG2Q9H4K7 406 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 YIPF1Q9Y548 306 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 C4orf51C9J302 202 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 MOSPD3O75425 235 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SOX14O95416 240 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PRH1P02810 166 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SHC1P29353 583 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ACTR1AP61163 376 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TBPL1P62380 186 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 HTR4Q13639 388 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 Q499Y3 187 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 C4orf46Q504U0 113 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 STPG1Q5TH74 334 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 LIPNQ5VXI9 398 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 DEGS2Q6QHC5 323 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 LYPD4Q6UWN0 246 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 NPAS4Q8IUM7 802 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CPOQ8IVL8 374 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CMTM4Q8IZR5 234 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 OR5W2Q8NH69 310 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 NT5CQ8TCD5 201 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TEX10Q9NXF1 929 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SH2B3Q9UQQ2 575 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM200CA6NKL6 621 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 DUXAA6NLW8 204 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SERPINA5P05154 406 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 FBP1P09467 338 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CSF1P09603 554 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 MUC1P15941 1255 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF20P17024 532 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 RPS13P62277 151 aaKnown RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PRAMEF17Q5VTA0 474 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 VN1R4Q7Z5H5 301 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF454Q8N9F8 522 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 OR5T3Q8NGG3 340 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 OR9A1PQ8NGU1 263 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PIK3IP1Q96FE7 263 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 NGBQ9NPG2 151 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ENTPD2Q9Y5L3 495 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 MYO16Q9Y6X6 1858 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 UPK3BL1B0FP48 263 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 UPK3BL2E5RIL1 263 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PRAMEF26H0Y7S4 382 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SLC17A2O00624 439 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ADH5P11766 374 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CCNOP22674 350 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GIFP27352 417 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GALNSP34059 522 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TRHRP34981 398 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 RGS19P49795 217 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SNRPD2P62316 118 aaKnown RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PRR5P85299 388 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PDGFRLQ15198 375 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SPIN3Q5JUX0 258 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ASTLQ6HA08 431 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GAREM2Q75VX8 874 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 MS4A6EQ96DS6 147 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 DTD2Q96FN9 168 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SLC41A3Q96GZ6 507 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ORAI3Q9BRQ5 295 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 HEBP2Q9Y5Z4 205 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PRSS44E7EML9 344 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 H7BY64 318 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CDC123O75794 336 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 NGFRP08138 427 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF16P17020 682 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SLC11A1P49279 550 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ACTA2P62736 377 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ACTG2P63267 376 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PJVKQ0ZLH3 352 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TEAD2Q15562 447 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ABCA11PQ4W5N1 156 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 AWAT2Q6E213 333 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 AMZ2Q86W34 360 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 FAM89BQ8N5H3 189 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 OR4K14Q8NGD5 310 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GAL3ST3Q96A11 431 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SEH1LQ96EE3 360 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 AUNIPQ9H7T9 357 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TCF7L1Q9HCS4 588 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PRSS16Q9NQE7 514 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ATG4BQ9Y4P1 393 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms