RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 FGFR1OP2Q9NVK5 253 aa15.35■□□□□ 0.05
HDDC3-201ENST00000330334 GID8Q9NWU2 228 aa15.35■□□□□ 0.05
HDDC3-201ENST00000330334 ZNF224Q9NZL3 707 aa15.35■□□□□ 0.05
HDDC3-201ENST00000330334 SH3GLB1Q9Y371 365 aa15.35■□□□□ 0.05
HDDC3-201ENST00000330334 MXRA5Q9NR99 2828 aa15.35■□□□□ 0.05
HDDC3-201ENST00000330334 TMEM129A0AVI4 362 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 C11orf98E9PRG8 122 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 MRASO14807 208 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 RNF13O43567 381 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 SEC14L2O76054 403 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 UBL3O95164 117 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 OR5F1O95221 314 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 MT-ND1P03886 318 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 THRBP10828 461 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 CD79AP11912 226 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 NR4A2P43354 598 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 LSM11P83369 360 aaKnown RBP eCLIP15.34■□□□□ 0.05
HDDC3-201ENST00000330334 REP15Q6BDI9 236 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 LRFN4Q6PJG9 635 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 DPPA2Q7Z7J5 298 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 CARM1Q86X55 608 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 LRRC17Q8N6Y2 441 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 C10orf82Q8WW14 230 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 NEU4Q8WWR8 484 aaPredicted RBP15.34■□□□□ 0.05
HDDC3-201ENST00000330334 LIPHQ8WWY8 451 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 ZNF566Q969W8 418 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 PIMREGQ9BSJ6 248 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 CCDC134Q9H6E4 229 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 SPEF1Q9Y4P9 236 aa15.34■□□□□ 0.05
HDDC3-201ENST00000330334 HTR3EA5X5Y0 456 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 CENPBD1B2RD01 187 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 hCG_2039718K7EN88 272 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 MGRN1O60291 552 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 SERPINI2O75830 405 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 ERCC1P07992 297 aaPredicted RBP15.33■□□□□ 0.04
HDDC3-201ENST00000330334 B4GALT1P15291 398 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 GZMKP49863 264 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 RAB1AP62820 205 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 PIGFQ07326 219 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 HIST3H3Q16695 136 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 CHRFAM7AQ494W8 412 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 NRN1LQ496H8 165 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 CGB2Q6NT52 195 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 FOXN4Q96NZ1 517 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 SEPHS2Q99611 448 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 MDFIQ99750 246 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 RIMS3Q9UJD0 308 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 CDC42EP3Q9UKI2 254 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 AP3M1Q9Y2T2 418 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 CMAHPQ9Y471 501 aa15.33■□□□□ 0.04
HDDC3-201ENST00000330334 LOC100653049A0A140TA62 436 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 KRT34O76011 436 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 BCL10O95999 233 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 IFNA2P01563 188 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 SERPINA5P05154 406 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 TSPAN19P0C672 248 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 PGA4P0DJD7 388 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 PGA3P0DJD8 388 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 OR8G3PP0DMU2 310 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 IGHV4-31P0DP07 118 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 GIFP27352 417 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 KDELR2P33947 212 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 GLRXP35754 106 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 GIPRP48546 466 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 TAS2R41P59536 307 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 SNTB2Q13425 540 aaKnown RBP15.32■□□□□ 0.04
HDDC3-201ENST00000330334 PODNL1Q6PEZ8 512 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 SPATA21Q7Z572 469 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 NANOGNBQ7Z5D8 188 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 SKA3Q8IX90 412 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 SLC22A24Q8N4F4 322 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 ANKS4BQ8N8V4 417 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 MS4A3Q96HJ5 214 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 MRPL13Q9BYD1 178 aaKnown RBP15.32■□□□□ 0.04
HDDC3-201ENST00000330334 TMEM38BQ9NVV0 291 aa15.32■□□□□ 0.04
HDDC3-201ENST00000330334 YLPM1P49750 1951 aaKnown RBP15.31■□□□□ 0.04
HDDC3-201ENST00000330334 FAM220BPB1ANY3 271 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 BLOC1S5-TXNDC5H3BN57 136 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 KPNA4O00629 521 aaPredicted RBP15.31■□□□□ 0.04
HDDC3-201ENST00000330334 DHHO43323 396 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 RAB36O95755 333 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 IGHG1P01857 330 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 UMPSP11172 480 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 FUT1P19526 365 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 PTDSS1P48651 473 aaKnown RBP15.31■□□□□ 0.04
HDDC3-201ENST00000330334 KRT80Q6KB66 452 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 HDDC2Q7Z4H3 204 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 NKAIN4Q8IVV8 208 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 SVOPLQ8N434 492 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 TMEM239Q8WW34 195 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 MRPL24Q96A35 216 aaKnown RBP15.31■□□□□ 0.04
HDDC3-201ENST00000330334 KCNK17Q96T54 332 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 ZNF446Q9NWS9 450 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 STX18Q9P2W9 335 aaKnown RBP15.31■□□□□ 0.04
HDDC3-201ENST00000330334 CAPN7Q9Y6W3 813 aa15.31■□□□□ 0.04
HDDC3-201ENST00000330334 A0A1W2PRG6 482 aa15.3■□□□□ 0.04
HDDC3-201ENST00000330334 NPIPB13A6NJU9 1138 aa15.3■□□□□ 0.04
HDDC3-201ENST00000330334 NPIPB4C9JG80 1138 aa15.3■□□□□ 0.04
HDDC3-201ENST00000330334 OR7A10O76100 309 aa15.3■□□□□ 0.04
HDDC3-201ENST00000330334 FARS2O95363 451 aaKnown RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms