RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 GTF3AQ92664 365 aaKnown RBP17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 TXNDC15Q96J42 360 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 IGHV1-69-2A0A0G2JMI3 117 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 MS4A18H0YCH9 400 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 TPD52L2O43399 206 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 AKAP8O43823 692 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 BCHEP06276 602 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 CCL2P13500 99 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 ERVS71-1P61550 626 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 CAMK2DQ13557 499 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 MS4A18Q3C1V0 323 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 UEVLDQ8IX04 471 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 BCL6BQ8N143 479 aaPredicted RBP17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 PAQR4Q8N4S7 273 aaPredicted RBP17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF781Q8N8C0 355 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 C1orf147Q96MC9 270 aaPredicted RBP17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 PPCSQ9HAB8 311 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 MED29Q9NX70 200 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 SLC7A8Q9UHI5 535 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 PRDM4Q9UKN5 801 aa17.29■□□□□ 0.36
SQSTM1-215ENST00000514093 CLDN25C9JDP6 229 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF500O60304 480 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 ETFAP13804 333 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 LSP1P33241 339 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 CLNS1AP54105 237 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 UFM1P61960 85 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 LARS2Q15031 903 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 TSTQ16762 297 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 RNF220Q5VTB9 566 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 DOK3Q7L591 496 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF627Q7L945 461 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 SKA3Q8IX90 412 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 MIER2Q8N344 545 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 FOXB1Q99853 325 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 SPATA9Q9BWV2 254 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 ULBP2Q9BZM5 246 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 B3GAT2Q9NPZ5 323 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 P2RX2Q9UBL9 471 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF69Q9UC07 566 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF232Q9UNY5 417 aa17.28■□□□□ 0.36
SQSTM1-215ENST00000514093 UBL3O95164 117 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 BPGMP07738 259 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 NQO1P15559 274 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 GATA3P23771 443 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 KLF3P57682 345 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 SELENOVP59797 346 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 TXNL4AP83876 142 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 BAMBIQ13145 260 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 DPY19L1Q2PZI1 675 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 FAM69AQ5T7M9 428 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 TREML1Q86YW5 311 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 OR6N1Q8NGY5 312 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 SYNPRQ8TBG9 265 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 SLC38A5Q8WUX1 472 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 SNX33Q8WV41 574 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 LRR1Q96L50 414 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF48Q96MX3 618 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 ZIM3Q96PE6 472 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 OR52E6Q96RD3 313 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 GAL3ST1Q99999 423 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 SLC6A13Q9NSD5 602 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 DECR2Q9NUI1 292 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 UBAP1Q9NZ09 502 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 GPR160Q9UJ42 338 aa17.27■□□□□ 0.36
SQSTM1-215ENST00000514093 IGKV1D-42A0A075B6H8 117 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 LOC102725191A0A1B0GVB3 256 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 OR2T1O43869 369 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 FZD7O75084 574 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 SERPINA5P05154 406 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 LCKP06239 509 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 IL12AP29459 219 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 CRATP43155 626 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 MVDP53602 400 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 CRISP3P54108 245 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 TEKQ02763 1124 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 GLO1Q04760 184 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 HNRNPA0Q13151 305 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 HFEQ30201 348 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 PCGF3Q3KNV8 242 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 RETREG3Q86VR2 466 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 ICA1LQ8NDH6 482 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 RAB1CQ92928 201 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 SLC38A4Q969I6 547 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 TIMD4Q96H15 378 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 DENND2DQ9H6A0 471 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 RPS6KB2Q9UBS0 482 aa17.26■□□□□ 0.35
SQSTM1-215ENST00000514093 IGLV3-9A0A075B6K5 115 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 ISPDA4D126 451 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 ZNF726A6NNF4 738 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 POM121CA8CG34 1229 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 SERPINI2O75830 405 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 KRT75O95678 551 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 ZNF250P15622 560 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 LBPP18428 481 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 IL13RA1P78552 427 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 RBBP4Q09028 425 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 TUSC1Q2TAM9 212 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 MMEL1Q495T6 779 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 LEG1Q6P5S2 330 aa17.25■□□□□ 0.35
SQSTM1-215ENST00000514093 SLC30A7Q8NEW0 376 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms