RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SACM1LQ9NTJ5 587 aa11.69□□□□□ -0.54
SPTLC1-201ENST00000262554 NPAP1Q9NZP6 1156 aa11.69□□□□□ -0.54
SPTLC1-201ENST00000262554 TEKT2Q9UIF3 430 aa11.69□□□□□ -0.54
SPTLC1-201ENST00000262554 ZNF281Q9Y2X9 895 aa11.69□□□□□ -0.54
SPTLC1-201ENST00000262554 CPAMD8Q8IZJ3 1885 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 A0A1W2PPK0 400 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PRSS37A4D1T9 235 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 TMEM200CA6NKL6 621 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PATE3B3GLJ2 98 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 D6RAR5 112 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PLPP3O14495 311 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PHYHO14832 338 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PLGP00747 810 aaPredicted RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 OR8G3PP0DMU2 310 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 NPR2P20594 1047 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 RBMS1P29558 406 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 APOBEC1P41238 236 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 CASP3P42574 277 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 RGS19P49795 217 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ACKR1Q16570 336 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 AGAP6Q5VW22 663 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MZT2BQ6NZ67 158 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 IL20RBQ6UXL0 311 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MAML2Q8IZL2 1156 aaPredicted RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ZNF519Q8TB69 540 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 C8orf44Q96CB5 159 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 AGAP4Q96P64 663 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 WDR54Q9H977 334 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 GALNT9Q9HCQ5 603 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MRPL39Q9NYK5 338 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 KLRF1Q9NZS2 232 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 GPN3Q9UHW5 284 aaPredicted RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 NXT1Q9UKK6 140 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 IKZF2Q9UKS7 526 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 KLHDC2Q9Y2U9 406 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 FKBP7Q9Y680 259 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PRR32B1ATL7 298 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PLA2G10O15496 165 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 RPP14O95059 124 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 IGHMP01871 453 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 EIF4EP06730 217 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PRKAR1AP10644 381 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 CCKBRP32239 447 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 CENPAP49450 140 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 BLVRAP53004 296 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 EGR3Q06889 387 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 TRA2AQ13595 282 aaKnown RBP eCLIP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MFSD13AQ14CX5 517 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 TRIM61Q5EBN2 209 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ZNF544Q6NX49 715 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MRPL14Q6P1L8 145 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 UBQLNLQ8IYU4 475 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 SCAIQ8N9R8 606 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ZNF248Q8NDW4 579 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ZNF417Q8TAU3 575 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ENKURQ8TC29 256 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 SLC22A8Q8TCC7 542 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PMEPA1Q969W9 287 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ZNF587Q96SQ5 575 aaPredicted RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ZCCHC4Q9H5U6 513 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 B3GAT2Q9NPZ5 323 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 SDHAF3Q9NRP4 125 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MED11Q9P086 117 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 PPP4R1LQ9P1A2 415 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 ABRACLQ9P1F3 81 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MYOTQ9UBF9 498 aa11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 MRM2Q9UI43 246 aaKnown RBP11.68□□□□□ -0.54
SPTLC1-201ENST00000262554 A0A0G2JMP0 313 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 A0A0X1KG70 313 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 HSPB2A8KAH6 182 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 NTN3O00634 580 aaPredicted RBP11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 PDCD5O14737 125 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 UPK3AO75631 287 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 AKR7A3O95154 331 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 ZFPL1O95159 310 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 HLA-DQA2P01906 255 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 EPXP11678 715 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 SRMP19623 302 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 MSX1P28360 303 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 PITPNBP48739 271 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 NANOS3P60323 173 aaKnown RBP11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 SELENBP1Q13228 472 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 ALKBH1Q13686 389 aaKnown RBP11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 HSPB2Q16082 182 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 FAM69BQ5VUD6 431 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 LIPNQ5VXI9 398 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 DPY19L4Q7Z388 723 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 AGBL5Q8NDL9 886 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 OR4M2Q8NGB6 313 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 OR4M1Q8NGD0 313 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 OR5AK2Q8NH90 309 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 THEM6Q8WUY1 208 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 RNF138Q8WVD3 245 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 MARVELD3Q96A59 401 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 DDIT4LQ96D03 193 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 SMAD5Q99717 465 aaKnown RBP11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 NOX4Q9NPH5 578 aa11.67□□□□□ -0.54
SPTLC1-201ENST00000262554 B9D1Q9UPM9 204 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms