RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ZNF813Q6ZN06 617 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 TMEM123Q8N131 208 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 SIGLECL1Q8N7X8 197 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 STK35Q8TDR2 534 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 UBLCP1Q8WVY7 318 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 TAF15Q92804 592 aaKnown RBP eCLIP17.35■□□□□ 0.374e-7■□□□□ 10.7
SQSTM1-215ENST00000514093 APOPT1Q96IL0 206 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 EMC6Q9BV81 110 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 ZNF385DQ9H6B1 395 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 NTN4Q9HB63 628 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 OPN4Q9UHM6 478 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 WNK2Q9Y3S1 2297 aa17.35■□□□□ 0.37
SQSTM1-215ENST00000514093 J3QLI3 93 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 SPAG7O75391 227 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 CLPTM1O96005 669 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 CBLP22681 906 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 CDKN2CP42773 168 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 GIPRP48546 466 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 PRKDCP78527 4128 aaKnown RBP17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 HOXC5Q00444 222 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 NKPD1Q17RQ9 610 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 SERPINA11Q86U17 422 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 LRRC17Q8N6Y2 441 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 MGARPQ8TDB4 240 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 RAB39BQ96DA2 213 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 TSPAN32Q96QS1 320 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 ZNF224Q9NZL3 707 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 TAAR3PQ9P1P4 343 aa17.34■□□□□ 0.37
SQSTM1-215ENST00000514093 VWFP04275 2813 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 A0A096LPI6 279 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 CCDC154A6NI56 674 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 M0R082 166 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 IGHV2-5P01817 119 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 PATE4P0C8F1 98 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 B4GALT1P15291 398 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 NME5P56597 212 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 RPS23P62266 143 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 RAB1AP62820 205 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 RAB39AQ14964 217 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 LIN52Q52LA3 116 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 RBMS3Q6XE24 437 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF621Q6ZSS3 439 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 WDFY1Q8IWB7 410 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF417Q8TAU3 575 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 ANP32BQ92688 251 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 DVL3Q92997 716 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 TESCQ96BS2 214 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 CCDC115Q96NT0 180 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF587Q96SQ5 575 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF346Q9UL40 294 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 CHST2Q9Y4C5 530 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 ARHGAP32A7KAX9 2087 aa17.33■□□□□ 0.36
SQSTM1-215ENST00000514093 C17orf100A8MU93 164 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 TRAF3IP2O43734 574 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 RAB36O95755 333 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 FSHBP01225 129 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 NUDT17P0C025 328 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 HLA-DOBP13765 273 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 S100A3P33764 101 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 RAD52P43351 418 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 MFSD13AQ14CX5 517 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 SMU1Q2TAY7 513 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 C20orf196Q8IYI0 205 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 TAAR8Q969N4 342 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 LRRC58Q96CX6 371 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 PANX1Q96RD7 426 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 RHOXF2Q9BQY4 288 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 OR51B6Q9H340 312 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 HINT3Q9NQE9 182 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF443Q9Y2A4 671 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 POFUT2Q9Y2G5 429 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 WIPI2Q9Y4P8 454 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 CACNG2Q9Y698 323 aa17.32■□□□□ 0.36
SQSTM1-215ENST00000514093 TLDC2A0PJX2 215 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 AIM2O14862 343 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 FAM157BP0CG42 384 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 PRTN3P24158 256 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 GRPRP30550 384 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 SERPINB5P36952 375 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 CRYBB2P43320 205 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 ANXA11P50995 505 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 LCN2P80188 198 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 RPS26P11Q5JNZ5 115 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 TMEM154Q6P9G4 183 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 LRRC34Q8IZ02 419 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 FGFBP3Q8TAT2 258 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 TCP10LQ8TDR4 215 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 TEX37Q96LM6 180 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 MKS1Q9NXB0 559 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 BTNL2Q9UIR0 455 aa17.31■□□□□ 0.36
SQSTM1-215ENST00000514093 DSPPQ9NZW4 1301 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 DNAJC9-AS1A6NH13 148 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 E9PBE3 544 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 ITM2AO43736 263 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 HPRP00739 348 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 RGS7BPQ6MZT1 257 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 USP51Q70EK9 711 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 H1FNTQ75WM6 255 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 ZNF584Q8IVC4 421 aa17.3■□□□□ 0.36
SQSTM1-215ENST00000514093 TRIML2Q8N7C3 387 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms