RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 STX11O75558 287 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 RPP14O95059 124 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 C8orf89P0DMQ9 161 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF3P17036 446 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 TBPP20226 339 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 HNF1AP20823 631 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MEOX2P50222 304 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SSTP61278 116 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FAM74A3Q4VXF1 159 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 LBHQ53QV2 105 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM268Q5VZI3 342 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MFSD12Q6NUT3 480 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FUT10Q6P4F1 479 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 RAB11FIP2Q7L804 512 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SPAG16Q8N0X2 631 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OR4N4Q8N0Y3 316 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OR2AJ1Q8NGZ0 328 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OR8S1Q8NH09 359 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OR4C6Q8NH72 309 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ZDHHC1Q8WTX9 485 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 DNASE2BQ8WZ79 361 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 GLYATL1Q969I3 302 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SIPA1Q96FS4 1042 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SEC11CQ9BY50 192 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SYNPO2LQ9H987 977 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 PRMT8Q9NR22 394 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 KLHL13Q9P2N7 655 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 COMMD3Q9UBI1 195 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 GNG8Q9UK08 70 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MRTO4Q9UKD2 239 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CROCCQ5TZA2 2017 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 PMS2P1A4D2B8 440 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ACOT7O00154 380 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 PHYHO14832 338 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CDC40O60508 579 aaKnown RBP eCLIP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 POP4O95707 220 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 IGHEP01854 428 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 IFNA6P05013 189 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 NID1P14543 1247 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 AGTR1P30556 359 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 PPIAP62937 165 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SYPL1Q16563 259 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SGCBQ16585 318 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CDNFQ49AH0 187 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CCSMST1Q4G0I0 132 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 LRTM2Q8N967 370 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CHRNA10Q9GZZ6 450 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM27Q9HBJ8 222 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 P2RX2Q9UBL9 471 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FOXJ3Q9UPW0 622 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 IGKV1-8A0A0C4DH67 115 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SLC31A1O15431 190 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FBXO24O75426 580 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 GJB5O95377 273 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CH25HO95992 272 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CNR1P21554 472 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FAUP35544 74 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SWI5Q1ZZU3 235 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SCGB2B2Q4G0G5 96 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ENPP7Q6UWV6 458 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 BTNL8Q6UX41 500 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 IL34Q6ZMJ4 242 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 TOMM5Q8N4H5 51 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FLVCR1-AS1Q8TAF5 88 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ST8SIA2Q92186 375 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CASD1Q96PB1 797 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 UQCC2Q9BRT2 126 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 RGS17Q9UGC6 210 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SIT1Q9Y3P8 196 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 C5orf51A6NDU8 294 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 PRR32B1ATL7 298 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 IDSB3KWA1 339 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 PPM1DO15297 605 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 F13BP05160 661 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MRPL3P09001 348 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 UCP1P25874 307 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ITGB8P26012 769 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF84P51523 738 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CAP1Q01518 475 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 C1orf53Q5VUE5 145 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ASB18Q6ZVZ8 466 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 RANBP3LQ86VV4 465 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 FAM160A2Q8N612 972 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 SCLYQ96I15 445 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 ERMAPQ96PL5 475 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 CDCA3Q99618 268 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 BEX2Q9BXY8 128 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OR2AG1Q9H205 316 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 OR51M1Q9H341 326 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 GLIPR2Q9H4G4 154 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 METTL17Q9H7H0 456 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 DNAJB11Q9UBS4 358 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MRPS33Q9Y291 106 aaKnown RBP4.89□□□□□ -1.63
SYNE1-220ENST00000471834 MTCH2Q9Y6C9 303 aa4.89□□□□□ -1.63
SYNE1-220ENST00000471834 A0A1W2PRU2 124 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PDCD5O14737 125 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 VEGFDO43915 354 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 PMS2P2O95744 297 aa4.88□□□□□ -1.63
SYNE1-220ENST00000471834 TNFP01375 233 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms