RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SLC16A9Q7RTY1 509 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 ZNF511Q8NB15 262 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 SYT14Q8NB59 555 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 ZNF248Q8NDW4 579 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 ARL5BQ96KC2 179 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 SNX18Q96RF0 628 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 DCLRE1CQ96SD1 692 aaKnown RBP17.1■□□□□ 0.33
USP39-202ENST00000409025 POTEKPQ9BYX7 375 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 KCNN2Q9H2S1 579 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 NCDNQ9UBB6 729 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 PCDHGA1Q9Y5H4 931 aa17.1■□□□□ 0.33
USP39-202ENST00000409025 A0A1W2PRG6 482 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 SHISA8B8ZZ34 492 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 F8A1P23610 371 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 HNRNPA0Q13151 305 aaKnown RBP17.09■□□□□ 0.33
USP39-202ENST00000409025 INPP5JQ15735 1006 aaPredicted RBP17.09■□□□□ 0.33
USP39-202ENST00000409025 LYPD4Q6UWN0 246 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 OR6V1Q8N148 313 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 TMEM156Q8N614 296 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 FADS6Q8N9I5 356 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 SCAIQ8N9R8 606 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 WDSUB1Q8N9V3 476 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 NEIL3Q8TAT5 605 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 ZNF519Q8TB69 540 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 POC1BQ8TC44 478 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 NXPE2Q96DL1 559 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 CEP19Q96LK0 163 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 FRMD6Q96NE9 622 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 SYT4Q9H2B2 425 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 RYDENQ9NUL5 291 aaKnown RBP17.09■□□□□ 0.33
USP39-202ENST00000409025 FBXL2Q9UKC9 423 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 COPS3Q9UNS2 423 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 IQCMA0A1B0GVH7 501 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 DCTN6O00399 190 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 CTDSP2O14595 271 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 CASKO14936 926 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 SLC3A1Q07837 685 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 ZP4Q12836 540 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 EEF1A1P5Q5VTE0 462 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 TMEM91Q6ZNR0 172 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 PM20D2Q8IYS1 436 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 SUMF1Q8NBK3 374 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 GNG8Q9UK08 70 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 GPR179Q6PRD1 2367 aa17.09■□□□□ 0.33
USP39-202ENST00000409025 H3BML4 177 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 HPP00738 406 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 IL11P20809 199 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 NUBP1P53384 320 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 PUDPQ08623 228 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 SPANXN2Q5MJ10 180 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 DMKNQ6E0U4 476 aaPredicted RBP17.08■□□□□ 0.33
USP39-202ENST00000409025 DHRS13Q6UX07 377 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 RPTNQ6XPR3 784 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 H1FNTQ75WM6 255 aaPredicted RBP17.08■□□□□ 0.33
USP39-202ENST00000409025 ARMC10Q8N2F6 343 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 ESX1Q8N693 406 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 PELI1Q96FA3 418 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 ANGPTL4Q9BY76 406 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 HPF1Q9NWY4 346 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 FOXJ2Q9P0K8 574 aa17.08■□□□□ 0.33
USP39-202ENST00000409025 DMDP11532 3685 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 PRSS37A4D1T9 235 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 MAGEB4O15481 346 aaPredicted RBP17.08■□□□□ 0.32
USP39-202ENST00000409025 RGS5O15539 181 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 EFNA2O43921 213 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 ETV6P41212 452 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 EIF1P41567 113 aaKnown RBP17.08■□□□□ 0.32
USP39-202ENST00000409025 INSL4Q14641 139 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 RGS21Q2M5E4 152 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 PLCZ1Q86YW0 608 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 CHST11Q9NPF2 352 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 ALKBH4Q9NXW9 302 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 ST6GALNAC2Q9UJ37 374 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 GRIP1Q9Y3R0 1128 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 FKBP7Q9Y680 259 aa17.08■□□□□ 0.32
USP39-202ENST00000409025 WDR87Q6ZQQ6 2873 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 A0A1W2PNU3 283 aaPredicted RBP17.07■□□□□ 0.32
USP39-202ENST00000409025 LIPT2A6NK58 231 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 MS4A18H0YCH9 400 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 MASP2O00187 686 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 OGG1O15527 345 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 IMPDH2P12268 514 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 TGM4P49221 684 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 SIRPAP78324 504 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 CHAF1BQ13112 559 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 MS4A18Q3C1V0 323 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 SLC22A10Q63ZE4 541 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 C3orf33Q6P1S2 294 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 CCDC190Q86UF4 302 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 TIGD4Q8IY51 512 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 MS4A15Q8N5U1 240 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 PARP16Q8N5Y8 322 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 PAQR8Q8TEZ7 354 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 AP3S1Q92572 193 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 ADAD1Q96M93 576 aaKnown RBP17.07■□□□□ 0.32
USP39-202ENST00000409025 MNTQ99583 582 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 QPCTLQ9NXS2 382 aa17.07■□□□□ 0.32
USP39-202ENST00000409025 VSX1Q9NZR4 365 aaPredicted RBP17.07■□□□□ 0.32
USP39-202ENST00000409025 PLEKHB1Q9UF11 243 aaPredicted RBP17.07■□□□□ 0.32
USP39-202ENST00000409025 TVP23AA6NH52 213 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms