RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 LPCAT3Q6P1A2 487 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ZNF788Q6ZQV5 615 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 PRSS42Q7Z5A4 293 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 CATSPERDQ86XM0 798 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ADGRF3Q8IZF5 1079 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 C4orf33Q8N1A6 199 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ST6GALNAC3Q8NDV1 305 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 OR1J1Q8NGS3 322 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 DUSP19Q8WTR2 217 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TCTEX1D2Q8WW35 142 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ZC3H10Q96K80 434 aaKnown RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 SEPHS2Q99611 448 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 GABRG3Q99928 467 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 PCDHAC1Q9H158 963 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 LYRM4Q9HD34 91 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 MED17Q9NVC6 651 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 C2CD4BA6NLJ0 364 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SERPINE3A8MV23 424 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 PATE3B3GLJ2 98 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 NDUFS8O00217 210 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SPRY3O43610 288 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 NDUFB2O95178 105 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 GRPP07492 148 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 GNLYP22749 145 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 EDNRAP25101 427 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TIA1P31483 386 aaKnown RBP eCLIP3.75□□□□□ -1.81
USH2A-202ENST00000366942 ASPAP45381 313 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 STT3AP46977 705 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 NPY4RP50391 375 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 POU3F1Q03052 451 aaPredicted RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 C2orf68Q2NKX9 166 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ZNF627Q7L945 461 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SLC16A9Q7RTY1 509 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TSPAN33Q86UF1 283 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TCTE3Q8IZS6 198 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 GCNT2Q8N0V5 402 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 DNAJC5GQ8N7S2 189 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SLC35G3Q8N808 338 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ROBO4Q8WZ75 1007 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 FAM46BQ96A09 425 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 MRPL24Q96A35 216 aaKnown RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 ORAI1Q96D31 301 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ITPKCQ96DU7 683 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 CPXM1Q96SM3 734 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 NPY6RQ99463 290 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 DUSP9Q99956 384 aaKnown RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 PCGF1Q9BSM1 259 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SDCBP2Q9H190 292 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 METTL9Q9H1A3 318 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ZNF701Q9NV72 531 aaPredicted RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 TOR4AQ9NXH8 423 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SCP2D1Q9UJQ7 156 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 PPP1R3CQ9UQK1 317 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 AUP1Q9Y679 476 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TRAPPC13A5PLN9 417 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 CXorf65A6NEN9 183 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 HDAC3O15379 428 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 MT-ATP6P00846 226 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ACP1P24666 158 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 FRKP42685 505 aaPredicted RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 PSMA6P60900 246 aaKnown RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 ACTA2P62736 377 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 LSM11P83369 360 aaKnown RBP eCLIP3.75□□□□□ -1.81
USH2A-202ENST00000366942 GK3PQ14409 553 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 EDDM3AQ14507 147 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 MPEG1Q2M385 716 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TYSND1Q2T9J0 566 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 PHC2Q8IXK0 858 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TTC9BQ8N6N2 239 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 LRRC61Q9BV99 259 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ZNF350Q9GZX5 532 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 C7orf69Q9H7B7 122 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SLC25A19Q9HC21 320 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 CHRAC1Q9NRG0 131 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TAAR3PQ9P1P4 343 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TMEFF2Q9UIK5 374 aaPredicted RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 A0A0G2JLM5 398 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 FEZF1A0PJY2 475 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 MS4A18H0YCH9 400 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SYT5O00445 386 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 NKX2-8O15522 239 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 GPR39O43194 453 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 LCMT2O60294 686 aaKnown RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 SLC22A5O76082 557 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TPPPO94811 219 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 FABP3P05413 133 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 CELA3BP08861 270 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 ORM2P19652 201 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SNU13P55769 128 aaKnown RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 DUSP2Q05923 314 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 MAP4K2Q12851 820 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 TCTN1Q2MV58 587 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 MS4A18Q3C1V0 323 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 CPSF7Q8N684 471 aaKnown RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 OR6K3Q8NGY3 331 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 VSTM2AQ8TAG5 236 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SFXN5Q8TD22 340 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 RNF166Q96A37 237 aaPredicted RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 GUCD1Q96NT3 240 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 BARD1Q99728 777 aaKnown RBP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms