RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	IL32	P24001	234 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	PEX2	P28328	305 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	MAP2K6	P52564	334 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	KEAP1	Q14145	624 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	SWT1	Q5T5J6	900 aa	Known RBP	12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	LPCAT4	Q643R3	524 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	ULK3	Q6PHR2	472 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	TFAP2E	Q6VUC0	442 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	GALNT5	Q7Z7M9	940 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	ZNF100	Q8IYN0	542 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	DNAJA4	Q8WW22	397 aa	Predicted RBP	12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	NINJ1	Q92982	152 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	EME1	Q96AY2	570 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	ALPK1	Q96QP1	1244 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	OSBPL10	Q9BXB5	764 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	HDHD5	Q9BXW7	423 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	GABARAPL1	Q9H0R8	117 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	VCX3B	Q9H321	246 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	BCO1	Q9HAY6	547 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	C8orf4	Q9NR00	106 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	TRAPPC4	Q9Y296	219 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245		U3KQV3	271 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	CELSR1	Q9NYQ6	3014 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245	MPDZ	O75970	2070 aa		12.84	□□□□□ -0.35
COMMD4-225	ENST00000569245		A0A1B0GWA3	101 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ARRDC5	A6NEK1	342 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ZNF724	A8MTY0	619 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245		G3V2T6	193 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	CHP2	O43745	196 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ADA	P00813	363 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	VHL	P40337	213 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	SLC35A1	P78382	337 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	PPP1R8	Q12972	351 aa	Known RBP	12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	MICA	Q29983	383 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	LINC00114	Q6XXX2	140 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ZBTB49	Q6ZSB9	765 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	C22orf34	Q6ZV56	151 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	WFDC8	Q8IUA0	241 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ZDHHC13	Q8IUH4	622 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	CCDC103	Q8IW40	242 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	LINC00471	Q8N535	108 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	PACRGL	Q8N7B6	248 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	STEAP2	Q8NFT2	490 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	OR52J3	Q8NH60	311 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	PIGX	Q8TBF5	258 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	SLC7A13	Q8TCU3	470 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	SLC38A4	Q969I6	547 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	C3orf49	Q96BT1	292 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	MPP4	Q96JB8	637 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	CIB1	Q99828	191 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	PRSS27	Q9BQR3	290 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	NAA11	Q9BSU3	229 aa	Predicted RBP	12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ADAM19	Q9H013	955 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	PLEKHF2	Q9H8W4	249 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	C12orf10	Q9HB07	376 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	RPS6KB2	Q9UBS0	482 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	ING1	Q9UK53	422 aa	Predicted RBP	12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	TMCC3	Q9ULS5	477 aa		12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	HRNR	Q86YZ3	2850 aa	Predicted RBP	12.83	□□□□□ -0.36
COMMD4-225	ENST00000569245	TRBV4-1	A0A0J9YWV2	114 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	SH3PXD2B	A1X283	911 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	ZC3H12D	A2A288	527 aa	Known RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	DEFB108A	A8MXU0	73 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	DNPH1	O43598	174 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	EIF1B	O60739	113 aa	Known RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	RAF1	P04049	648 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	ZNF26	P17031	533 aa	Predicted RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	PSMB1	P20618	241 aa	Known RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	IDUA	P35475	653 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	OR3A2	P47893	321 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	P2RY6	Q15077	328 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	TSC22D1	Q15714	1073 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	SFRP5	Q5T4F7	317 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	PODNL1	Q6PEZ8	512 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	PAMR1	Q6UXH9	720 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	LSR	Q86X29	649 aa	Predicted RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	GABRG1	Q8N1C3	465 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	UBE2J2	Q8N2K1	259 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	GIPC3	Q8TF64	312 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	KISS1R	Q969F8	398 aa	Predicted RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	S100PBP	Q96BU1	408 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	SELENON	Q9NZV5	590 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	PDP1	Q9P0J1	537 aa	Predicted RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	PRSS50	Q9UI38	385 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	SLC7A7	Q9UM01	511 aa		12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	NOSIP	Q9Y314	301 aa	Known RBP	12.82	□□□□□ -0.36
COMMD4-225	ENST00000569245	AKAP6	Q13023	2319 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	ZNF814	B7Z6K7	855 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	PDLIM1	O00151	329 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	GPR171	O14626	319 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	SIAH2	O43255	324 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	CCNB2	O95067	398 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	THBD	P07204	575 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	IMPDH2	P12268	514 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	RBM34	P42696	430 aa	Known RBP	12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	PPP2R2B	Q00005	443 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	DAG1	Q14118	895 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	PDK3	Q15120	406 aa		12.81	□□□□□ -0.36
COMMD4-225	ENST00000569245	TESK1	Q15569	626 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms