RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TNFRSF17Q02223 184 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CAMK2DQ13557 499 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CLPPQ16740 277 aaPredicted RBP7.92□□□□□ -1.14
USP40-203ENST00000427112 PYHIN1Q6K0P9 492 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CSNK1A1LQ8N752 337 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 TMIEQ8NEW7 156 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 OR2L8Q8NGY9 312 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 OR52N1Q8NH53 320 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 ZNF524Q96C55 264 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 OR2M4Q96R27 311 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 KCNJ15Q99712 375 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 GTPBP2Q9BX10 602 aaKnown RBP7.92□□□□□ -1.14
USP40-203ENST00000427112 PIGUQ9H490 435 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 FOLH1BQ9HBA9 442 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 SOHLH2Q9NX45 425 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 NCDNQ9UBB6 729 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 SLC35A3Q9Y2D2 325 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 SLC27A6Q9Y2P4 619 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 LOC400499M0QZD8 3231 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 DUXAA6NLW8 204 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 B8ZZF3 427 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 H0YIG0 161 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 TXNL1O43396 289 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 MPZL1O95297 269 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 GTF2F2P13984 249 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 ST6GAL1P15907 406 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CXCL2P19875 107 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 MTNR1BP49286 362 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CCR9P51686 369 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 DPTQ07507 201 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 OPCMLQ14982 345 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 TEX19Q8NA77 164 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 RCBTB1Q8NDN9 531 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.92□□□□□ -1.14
USP40-203ENST00000427112 HERVK_113Q902F9 699 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CMBLQ96DG6 245 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 C10orf90Q96M02 699 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 CNN2Q99439 309 aaKnown RBP7.92□□□□□ -1.14
USP40-203ENST00000427112 ZNF436Q9C0F3 470 aaPredicted RBP7.92□□□□□ -1.14
USP40-203ENST00000427112 CMC2Q9NRP2 79 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 ACTR10Q9NZ32 417 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 KCNN3Q9UGI6 736 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 UBQLN2Q9UHD9 624 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 PLEKHA6Q9Y2H5 1048 aa7.92□□□□□ -1.14
USP40-203ENST00000427112 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.92□□□□□ -1.14
USP40-203ENST00000427112 DIDO1Q9BTC0 2240 aaKnown RBP7.92□□□□□ -1.14
USP40-203ENST00000427112 TO15178 435 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 CBR1P16152 277 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 ZNF28P17035 718 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 M6PRP20645 277 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 G0S2P27469 103 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 FRKP42685 505 aaPredicted RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 CDKN2AP42771 156 aaKnown RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 ADPRHP54922 357 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TEKQ02763 1124 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 GPM6BQ13491 265 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 AANATQ16613 207 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TUSC1Q2TAM9 212 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 LIPNQ5VXI9 398 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 NKAIN2Q5VXU1 208 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 OR7E24Q6IFN5 339 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TMEM65Q6PI78 240 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 CD200R1LQ6Q8B3 271 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 CORO6Q6QEF8 472 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 CREB3L2Q70SY1 520 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 GID4Q8IVV7 300 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 SRFBP1Q8NEF9 429 aaKnown RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 OR4S1Q8NGB4 309 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 OR11G2Q8NGC1 345 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 OR51S1Q8NGJ8 323 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 NSMAFQ92636 917 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TMEM106AQ96A25 262 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 S100PBPQ96BU1 408 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 MMABQ96EY8 250 aaPredicted RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 ADOQ96SZ5 270 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TPSD1Q9BZJ3 242 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 EPHX3Q9H6B9 360 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TMEM185BQ9H7F4 350 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 NIPAL2Q9H841 368 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 COPZ2Q9P299 210 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 PFDN2Q9UHV9 154 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 LOC105371267A0A1B0GV96 52 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 SHISA8B8ZZ34 492 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 IGHA1P01876 353 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 SPARCP09486 303 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 UBL4AP11441 157 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 NID1P14543 1247 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 EEF1A1P68104 462 aaKnown RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 SPOCK1Q08629 439 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 ENPP2Q13822 863 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 FAM69BQ5VUD6 431 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TMEM88Q6PEY1 159 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 ZNF765Q7L2R6 523 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 LINC00346Q8IVM7 164 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 FAM181AQ8N9Y4 354 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 ZC3H10Q96K80 434 aaKnown RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 LINC00615Q96LM1 132 aaPredicted RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 DMRTA2Q96SC8 542 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 MED18Q9BUE0 208 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TRIM2Q9C040 744 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms