RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 C21orf33P30042 268 aaPredicted RBP16.69■□□□□ 0.26
CLN3-206ENST00000360019 CLDN20P56880 219 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 PPIAP62937 165 aaKnown RBP16.69■□□□□ 0.26
CLN3-206ENST00000360019 TMEM99Q8N816 258 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 FAM98AQ8NCA5 519 aaKnown RBP16.69■□□□□ 0.26
CLN3-206ENST00000360019 ZPLD1Q8TCW7 415 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 OTULINQ96BN8 352 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 KLHL15Q96M94 604 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 NMNAT3Q96T66 252 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 DDOQ99489 341 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 CCDC90BQ9GZT6 254 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 CCNB1IP1Q9NPC3 277 aa16.69■□□□□ 0.26
CLN3-206ENST00000360019 CNOT2Q9NZN8 540 aaKnown RBP16.69■□□□□ 0.26
CLN3-206ENST00000360019 ZNF346Q9UL40 294 aaKnown RBP16.69■□□□□ 0.26
CLN3-206ENST00000360019 PTPRQQ9UMZ3 2332 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 TRAV17A0A0B4J275 112 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 EFCAB10A6NFE3 127 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 ZNF814B7Z6K7 855 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 PRR23D1E9PI22 279 aaPredicted RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 K7ENP7 123 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 SULT2B1O00204 365 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 MT-ND2P03891 347 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 STSP08842 583 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 PRR23D2P0DMB1 279 aaPredicted RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 CLUP10909 449 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 PIPP12273 146 aaPredicted RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 KLK2P20151 261 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 STARP49675 285 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 CDH11P55287 796 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 ACKR1Q16570 336 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 MESTQ5EB52 335 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 NIPAL3Q6P499 406 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 INO80CQ6PI98 192 aaPredicted RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 KCTD8Q6ZWB6 473 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 PRSS48Q7RTY5 328 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 GGNQ86UU5 652 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 NPEPL1Q8NDH3 523 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 FANCFQ9NPI8 374 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 B3GAT1Q9P2W7 334 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 GRHPRQ9UBQ7 328 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLN3-206ENST00000360019 PCDHGA9Q9Y5G4 932 aaKnown RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 TNRC6AQ8NDV7 1962 aaKnown RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 ZZEF1O43149 2961 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 CHD8Q9HCK8 2581 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 A0A1W2PNV4 684 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 DPPA5A6NC42 116 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 GJE1A6NN92 205 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 TNFSF11O14788 317 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 IGHMP01871 453 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 PDGFAP04085 211 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 CDK1P06493 297 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 ACVR2AP27037 513 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 PLA2G5P39877 138 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 CDKN2AP42771 156 aaKnown RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 RPL5P46777 297 aaKnown RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 ST3GAL4Q11206 333 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 KRR1Q13601 381 aaKnown RBP16.68■□□□□ 0.26
CLN3-206ENST00000360019 EMC4Q5J8M3 183 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 RNFT1Q5M7Z0 435 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 IGFL3Q6UXB1 125 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 GHDCQ8N2G8 530 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 ADPRHL1Q8NDY3 354 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 SLC6A15Q9H2J7 730 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 RAXQ9Y2V3 346 aa16.68■□□□□ 0.26
CLN3-206ENST00000360019 OR6C68A6NDL8 312 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 SNTNA6NMZ2 147 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 PCMT1P22061 227 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 SLC2A5P22732 501 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 HTR1FP30939 366 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 SUCLG1P53597 346 aaKnown RBP16.67■□□□□ 0.26
CLN3-206ENST00000360019 NR1H2P55055 460 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 SLC35A1P78382 337 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 H3F3AP84243 136 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 PMP22Q01453 160 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 ZNF239Q16600 458 aaKnown RBP16.67■□□□□ 0.26
CLN3-206ENST00000360019 GPR139Q6DWJ6 353 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 XAF1Q6GPH4 301 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 LEG1Q6P5S2 330 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 SLC22A16Q86VW1 577 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 GID4Q8IVV7 300 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 OR9Q1Q8NGQ5 310 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 ZNF519Q8TB69 540 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 RFKQ969G6 155 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 MYDGFQ969H8 173 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 RNFT2Q96EX2 444 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 ADGRG7Q96K78 797 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 TXNIPQ9H3M7 391 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 BATF3Q9NR55 127 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 MRPS18AQ9NVS2 196 aaKnown RBP16.67■□□□□ 0.26
CLN3-206ENST00000360019 QPCTLQ9NXS2 382 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 H2AFY2Q9P0M6 372 aaPredicted RBP16.67■□□□□ 0.26
CLN3-206ENST00000360019 SNX5Q9Y5X3 404 aa16.67■□□□□ 0.26
CLN3-206ENST00000360019 CCDC182A6NF36 153 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 SEC14L5O43304 696 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 MRPS14O60783 128 aaKnown RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 RAMP1O60894 148 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 GYPBP06028 91 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 POU3F2P20265 443 aaPredicted RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 PAICSP22234 425 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms