RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TMEM115Q12893 351 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 PNLIPRP3Q17RR3 467 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 PAN3Q58A45 887 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 IDNKQ5T6J7 187 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ZNF776Q68DI1 518 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 ZNF322Q6U7Q0 402 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 DRAM2Q6UX65 266 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 CXXC5Q7LFL8 322 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 SZRD1Q7Z422 152 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ANKRD46Q86W74 232 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 GID4Q8IVV7 300 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 CFAP52Q8N1V2 620 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 MEIOBQ8N635 442 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 TRMT10AQ8TBZ6 339 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 LRR1Q96L50 414 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 TSSK3Q96PN8 268 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 IL4I1Q96RQ9 567 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 SEMA3CQ99985 751 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ZMAT3Q9HA38 289 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 HRASLSQ9HDD0 168 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 MIEF1Q9NQG6 463 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ACSS1Q9NUB1 689 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 ZNF629Q9UEG4 869 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 FKBPLQ9UIM3 349 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 TCRBV16S1A1N1A0A5B0 115 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 C1orf196B1AJZ1 125 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 NDUFS8O00217 210 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 BCL2L11O43521 198 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 GATBO75879 557 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 KLHL18O94889 574 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 HKR1P10072 659 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 TACR1P25103 407 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 FAUP35544 74 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 GPR3P46089 330 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ERVK-25P63136 954 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ILF3Q12906 894 aaKnown RBP eCLIP4.84□□□□□ -1.63
USP28-213ENST00000544967 PRAMEF8Q5VWM4 474 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 PRAMEF7Q5VXH5 474 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 REEP3Q6NUK4 255 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 PAQR6Q6TCH4 344 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 TPGS1Q6ZTW0 290 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ASB18Q6ZVZ8 466 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 DPPA4Q7L190 304 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 TMEM200AQ86VY9 491 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 NAGSQ8N159 534 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 WDSUB1Q8N9V3 476 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 DNAAF1Q8NEP3 725 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 OR52M1Q8NGK5 317 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 OR51Q1Q8NH59 317 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 RNASE11Q8TAA1 199 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 NUDT8Q8WV74 236 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 APIPQ96GX9 242 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 C12orf66Q96MD2 445 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 DPH2Q9BQC3 489 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 ADGRE3Q9BY15 652 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ARL6Q9H0F7 186 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 C1orf198Q9H425 327 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 CDCP1Q9H5V8 836 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 SMCO4Q9NRQ5 59 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 FAM86C1Q9NVL1 165 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 WSB2Q9NYS7 404 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 TAS2R8Q9NYW2 309 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 VPS29Q9UBQ0 182 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 MIOXQ9UGB7 285 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 PLEKHM1Q9Y4G2 1056 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 RHPN2P1A8MT19 583 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 FFAR1O14842 300 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 IFNA2P01563 188 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 TRBC1P01850 177 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 PRNPP04156 253 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 CRYBA1P05813 215 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 RAB40ALP0C0E4 278 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 ZNF883P0CG24 379 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 HLA-GP17693 338 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 PTGFRP43088 359 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 CCR8P51685 355 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 TAS2R60P59551 318 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 MC1RQ01726 317 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 ZNF235Q14590 738 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 ARHGAP19Q14CB8 494 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 ALKAL2Q6UX46 152 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 TMIGD1Q6UXZ0 262 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 Q6ZTK2 550 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 SLC36A1Q7Z2H8 476 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 MOGAT3Q86VF5 341 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 NXPE1Q8N323 547 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 HORMAD2Q8N7B1 307 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 SAMD12Q8N8I0 201 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 SLC2A12Q8TD20 617 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 EDARADDQ8WWZ3 215 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 RAB40AQ8WXH6 277 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 COPS8Q99627 209 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 SLC12A9Q9BXP2 914 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 MRPL37Q9BZE1 423 aaKnown RBP4.84□□□□□ -1.64
USP28-213ENST00000544967 TINAGL1Q9GZM7 467 aaPredicted RBP4.84□□□□□ -1.64
USP28-213ENST00000544967 TRIM36Q9NQ86 728 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 IL36AQ9UHA7 158 aa4.84□□□□□ -1.64
USP28-213ENST00000544967 TRBV4-1A0A0J9YWV2 114 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 OR6C68A6NDL8 312 aa4.83□□□□□ -1.64
USP28-213ENST00000544967 URADA6NGE7 173 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms