RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PWWP2BQ6NUJ5 590 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 POMZP3Q6PJE2 187 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 METAP1DQ6UB28 335 aaPredicted RBP11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 EID2Q8N6I1 236 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 NLGN4YQ8NFZ3 816 aaPredicted RBP11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 ZNRF4Q8WWF5 429 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 GHSRQ92847 366 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 PELI1Q96FA3 418 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 PGLYRP3Q96LB9 341 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 ALG12Q9BV10 488 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 SEMA4CQ9C0C4 833 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 GAREM1Q9H706 876 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 RPRD1BQ9NQG5 326 aaKnown RBP11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 PRMT8Q9NR22 394 aaPredicted RBP11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 NCDNQ9UBB6 729 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 ST6GALNAC2Q9UJ37 374 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 GNG8Q9UK08 70 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 MOKQ9UQ07 419 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 PCDHGB2Q9Y5G2 931 aa11.76□□□□□ -0.53
SPTLC1-201ENST00000262554 LAMA1P25391 3075 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 ADAMTS9Q9P2N4 1935 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 CPNE3O75131 537 aaKnown RBP11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 BGLAPP02818 100 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 PTBP1P26599 531 aaKnown RBP eCLIP11.75□□□□□ -0.531e-6■■□□□ 13.1
SPTLC1-201ENST00000262554 SHC1P29353 583 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 POLR2HP52434 150 aaKnown RBP11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 FOXL2P58012 376 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 SIRPAP78324 504 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 IDNKQ5T6J7 187 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 HBMQ6B0K9 141 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 GPR139Q6DWJ6 353 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 RPL22L1Q6P5R6 122 aaKnown RBP11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 CNIH2Q6PI25 160 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 PAMR1Q6UXH9 720 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 MAFAQ8NHW3 353 aaPredicted RBP11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 ITPKCQ96DU7 683 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 SMIM19Q96E16 107 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 RXFP3Q9NSD7 469 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 GRIP1Q9Y3R0 1128 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 NPFFR2Q9Y5X5 522 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 EXPH5Q8NEV8 1989 aa11.75□□□□□ -0.53
SPTLC1-201ENST00000262554 A0A1W2PQ09 198 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 A0A1W2PRG6 482 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 C17orf51A8MQB3 221 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 LAMTOR5O43504 91 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 SC5DO75845 299 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 RENP00797 406 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 MT-ATP6P00846 226 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 PDGFBP01127 241 aaPredicted RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 CD1AP06126 327 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 TDGF1P13385 188 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 EVX1P49640 407 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 GDI2P50395 445 aaKnown RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 SLC26A5P58743 744 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 CDK5R1Q15078 307 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 QPRTQ15274 297 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 CCDC58Q4VC31 144 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 ACSM3Q53FZ2 586 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 LINC01590Q5TEZ4 76 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 OVCH1Q7RTY7 1134 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 MAMDC2Q7Z304 686 aaPredicted RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 PXKQ7Z7A4 578 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 MISPQ8IVT2 679 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 DEFB123Q8N688 67 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 TEX19Q8NA77 164 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 APCDD1LQ8NCL9 501 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 NFAM1Q8NET5 270 aaPredicted RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 GPR119Q8TDV5 335 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 THAP4Q8WY91 577 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 KCTD12Q96CX2 325 aaKnown RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 TMED7-TICAM2A0A0A6YYA0 188 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 TRBV2A0A0J9YWF9 115 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 MAGEB4O15481 346 aaPredicted RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 SUSD5O60279 629 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 CSF3P09919 207 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 EDNRAP25101 427 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 EMP2P54851 167 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 FAM27D1Q5T7N8 215 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 SLC16A9Q7RTY1 509 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 GRINAQ7Z429 371 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 PPP1R3BQ86XI6 285 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 EXD3Q8N9H8 876 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 OR2T4Q8NH00 348 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 NUBPLQ8TB37 319 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 DUSP19Q8WTR2 217 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 TSPAN32Q96QS1 320 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 PPIL3Q9H2H8 161 aaKnown RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 TAS2R10Q9NYW0 307 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 PPIEQ9UNP9 301 aaKnown RBP11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 COPS3Q9UNS2 423 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 TMED7Q9Y3B3 224 aa11.74□□□□□ -0.53
SPTLC1-201ENST00000262554 C4orf47A7E2U8 309 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 A8MVM7 634 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 FAM171A2A8MVW0 826 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 FAM25AB3EWG3 89 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 FAM25CB3EWG5 89 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 FAM25GB3EWG6 89 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 ONECUT2O95948 504 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 HTR3AP46098 478 aa11.73□□□□□ -0.53
SPTLC1-201ENST00000262554 ASAH1Q13510 395 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms