RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ZNF7P17097 686 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 PTAFRP25105 342 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 OR1E1P30953 314 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 IFNGR2P38484 337 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 CEACAM6P40199 344 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 CTSOP43234 321 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 KIAA1024LP59773 190 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PSMA6P60900 246 aaKnown RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 NAAAQ02083 359 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 BCL2L1Q07817 233 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 SLC10A7Q0GE19 358 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 HMGN3Q15651 99 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 UBE2NLQ5JXB2 153 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 CPTPQ5TA50 214 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 SMARCD3Q6STE5 483 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 OR4N4Q8N0Y3 316 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 ZNF561Q8N587 486 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 TBC1D19Q8N5T2 526 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 TCEANCQ8N8B7 351 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 BEST4Q8NFU0 473 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 OR10Q1Q8NGQ4 319 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 STOML3Q8TAV4 291 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 ADAMTS15Q8TE58 950 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 ABHD1Q96SE0 405 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 TSNAXQ99598 290 aaKnown RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 RSRP1Q9BUV0 290 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 MAN2C1Q9NTJ4 1040 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 TMEM100Q9NV29 134 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 TEX10Q9NXF1 929 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 ICKQ9UPZ9 632 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 CLDN16Q9Y5I7 305 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 IGHV1OR15-9A0A0B4J2B8 117 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PRR23D1E9PI22 279 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 NPIPB9F8W1W9 429 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 LGALS8O00214 317 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PLPP2O43688 288 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 IGHV2-5P01817 119 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 CRYABP02511 175 aaKnown RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 HPXP02790 462 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 HRGP04196 525 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PRR23D2P0DMB1 279 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 ABOP16442 354 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 EPORP19235 508 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 RAB4AP20338 218 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 AGAP20933 346 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 MST1P26927 711 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 HTR1FP30939 366 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 ACVRL1P37023 503 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 FNTBP49356 437 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 SPCS3P61009 180 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PMP22Q01453 160 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 FNDC3BQ53EP0 1204 aaKnown RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 ATPAF1Q5TC12 328 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 FRG2Q64ET8 278 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PMS2CLQ68D20 193 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 TMPRSS11FQ6ZWK6 438 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 OVCH1Q7RTY7 1134 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 GLT6D1Q7Z4J2 308 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 IQCHQ86VS3 1027 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 LSRQ86X29 649 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 CIR1Q86X95 450 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 C1QL4Q86Z23 238 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PUSL1Q8N0Z8 303 aaKnown RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 OR2AP1Q8NGE2 309 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 OR10K1Q8NGX5 313 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 OR14C36Q8NHC7 312 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 NANPQ8TBE9 248 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 TCTEX1D2Q8WW35 142 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 SORCS1Q8WY21 1168 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 GTPBP3Q969Y2 492 aaKnown RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 SCARF2Q96GP6 870 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 FRG2BQ96QU4 278 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 ELF4Q99607 663 aaPredicted RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 WRAP53Q9BUR4 548 aaKnown RBP4.85□□□□□ -1.63
USP28-213ENST00000544967 CTPS2Q9NRF8 586 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 PPP4R1LQ9P1A2 415 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 SLC25A13Q9UJS0 675 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 SLC13A4Q9UKG4 626 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 SLC6A14Q9UN76 642 aa4.85□□□□□ -1.63
USP28-213ENST00000544967 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 TRBC2A0A5B9 178 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 SHISA3A0PJX4 238 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 ANKRD20A5PA0PJZ0 165 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 F5H5P2 479 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 KHDRBS3O75525 346 aaKnown RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 RBBP9O75884 186 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 KLF8O95600 359 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 GKN3PP0CG01 181 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 SPP1P10451 314 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 PAX1P15863 534 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 RCC1P18754 421 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 IDSP22304 550 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 CD79BP40259 229 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 CXCL12P48061 93 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 P2RY4P51582 365 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 LUMP51884 338 aaPredicted RBP4.84□□□□□ -1.63
USP28-213ENST00000544967 HCCSP53701 268 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 TAS2R38P59533 333 aa4.84□□□□□ -1.63
USP28-213ENST00000544967 DEFA5Q01523 94 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms