RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 WBP2NLQ6ICG8 309 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 KRT74Q7RTS7 529 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 SLC43A2Q8N370 569 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 KCTD12Q96CX2 325 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 ZC3HAV1LQ96H79 300 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 NANSQ9NR45 359 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 MRPS7Q9Y2R9 242 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 EML5Q05BV3 1969 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 PRR32B1ATL7 298 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 H7C1C5 153 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 CSNK1EP49674 416 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 EFNA3P52797 238 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 LCN6P62502 163 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 RPL6Q02878 288 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 EGR4Q05215 589 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 GPR176Q14439 515 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 FNDC7Q5VTL7 733 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 ATG4DQ86TL0 474 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 RFT1Q96AA3 541 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 PAQR5Q9NXK6 330 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 RNF215Q9Y6U7 377 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 CPNE3O75131 537 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 TRAPPC2P0DI81 140 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 TRAPPC2BP0DI82 140 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 ZP2Q05996 745 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 LTBQ06643 244 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 COL19A1Q14993 1142 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF74Q16587 644 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 SYS1Q8N2H4 156 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF527Q8NB42 609 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 FAM71CQ8NEG0 241 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF563Q8TA94 476 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 KTI12Q96EK9 354 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 ALG12Q9BV10 488 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 FOXQ1Q9C009 403 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 BRD7Q9NPI1 651 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 UNC13CQ8NB66 2214 aa16.74■□□□□ 0.27
SHKBP1-201ENST00000291842 ARPC3O15145 178 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF264O43296 627 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 MBTPS2O43462 519 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 RBMS1P29558 406 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 CLDN20P56880 219 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 CTXN1P60606 82 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 PRPS1P60891 318 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 VWA2Q5GFL6 755 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 CEP78Q5JTW2 689 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 MTFR2Q6P444 385 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 TDHQ8IZJ6 230 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 TRIM63Q969Q1 353 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 NMNAT2Q9BZQ4 307 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 UCK1Q9HA47 277 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 SRA1Q9HD15 236 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 FITM1A5D6W6 292 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ICOSLGO75144 302 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 RPP14O95059 124 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 IL33O95760 270 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 EPXP11678 715 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 SDHBP21912 280 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 PPICP45877 212 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 FOXL2P58012 376 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 TDGQ13569 410 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ALG10Q5BKT4 473 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 JAZF1Q86VZ6 243 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF440Q8IYI8 595 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 LSM14AQ8ND56 463 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 OR7G1Q8NGA0 311 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ZDHHC12Q96GR4 267 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 LRFN5Q96NI6 719 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ZFP3Q96NJ6 502 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 SNX18Q96RF0 628 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ELF4Q99607 663 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 SLC25A18Q9H1K4 315 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ABCG5Q9H222 651 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 RP1P56715 2156 aa16.73■□□□□ 0.27
SHKBP1-201ENST00000291842 ACOD1A6NK06 481 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 DCTN6O00399 190 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 KHNYNO15037 678 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 FLRT2O43155 660 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 WISP1O95388 367 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 SERPINA3P01011 423 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 HLA-DMAP28067 261 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 RORAP35398 523 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 NANOS3P60323 173 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 C14orf28Q4W4Y0 310 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 LINC01590Q5TEZ4 76 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 C1orf189Q5VU69 101 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 RPL22L1Q6P5R6 122 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF687Q8N1G0 1237 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 YIPF7Q8N8F6 280 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 HSD17B8Q92506 261 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 MARVELD1Q9BSK0 173 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 GALNT9Q9HCQ5 603 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 MMP25Q9NPA2 562 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 OR6C70A6NIJ9 312 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 LMO7DNF2Z398 122 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 CD3GP09693 182 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 PNMTP11086 282 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 TACR3P29371 465 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 ARL4DP49703 201 aa16.72■□□□□ 0.27
SHKBP1-201ENST00000291842 TOMM34Q15785 309 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms