RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 OR7A5Q15622 319 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 GABRA6Q16445 453 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 RPS26P11Q5JNZ5 115 aaPredicted RBP16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 TMEM225Q6GV28 225 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 ABHD12BQ7Z5M8 362 aaPredicted RBP16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 ATG4DQ86TL0 474 aaPredicted RBP16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 DTX2Q86UW9 622 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 DEPDC4Q8N2C3 294 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 TMEM99Q8N816 258 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 OR9K2Q8NGE7 335 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 SPDL1Q96EA4 605 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 ALG2Q9H553 416 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 SLCO1B3Q9NPD5 702 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 NPAP1Q9NZP6 1156 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 CORO2BQ9UQ03 480 aa16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 MAGED1Q9Y5V3 778 aaPredicted RBP16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 FN1P02751 2386 aaKnown RBP16.78■□□□□ 0.28
CCDC28A-203ENST00000617445 OR6C65A6NJZ3 312 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 ABCD4O14678 606 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 NPIPB7O75200 414 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 AKR7A3O95154 331 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 ITGA5P08648 1049 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 PAX7P23759 505 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 MPGP29372 298 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 PGGHGQ32M88 737 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 C1orf140Q5VVS0 124 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 KRT73Q86Y46 540 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 FUNDC1Q8IVP5 155 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 OR52N5Q8NH56 324 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 DYDC1Q8WWB3 177 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 STON2Q8WXE9 905 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 NEUROG1Q92886 237 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 C3orf49Q96BT1 292 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 SPATA5L1Q9BVQ7 753 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 RABEP2Q9H5N1 569 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 C12orf10Q9HB07 376 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 SLC7A10Q9NS82 523 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 RASD1Q9Y272 281 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 AMDHD2Q9Y303 409 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 CHST2Q9Y4C5 530 aa16.77■□□□□ 0.28
CCDC28A-203ENST00000617445 JMJD1CQ15652 2540 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 TMEM229AB2RXF0 380 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 SMAD7O15105 426 aaKnown RBP16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 NUDT7P0C024 238 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 PRG2P13727 222 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 CD40P25942 277 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 PRKAR1BP31321 381 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 AQP5P55064 265 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 CDH11P55287 796 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 TSPO2Q5TGU0 170 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 AGAP6Q5VW22 663 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 REEP3Q6NUK4 255 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 C5orf46Q6UWT4 87 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 Q71RC1 249 aaPredicted RBP16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 AAED1Q7RTV5 226 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 SERPINA11Q86U17 422 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 OR52E4Q8NGH9 312 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 MFSD8Q8NHS3 518 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 MAL2Q969L2 176 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 BOD1Q96IK1 185 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 EBF4Q9BQW3 602 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 TRAF4Q9BUZ4 470 aaPredicted RBP16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 SLCO5A1Q9H2Y9 848 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 BARX1Q9HBU1 254 aaPredicted RBP16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 SLC25A37Q9NYZ2 338 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 CCDC167Q9P0B6 97 aa16.76■□□□□ 0.27
CCDC28A-203ENST00000617445 ALPK2Q86TB3 2170 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 HMGB1P1B2RPK0 211 aaPredicted RBP16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 FRS3O43559 492 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 AHSA1O95433 338 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 ARAFP10398 606 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 ZNF83P51522 516 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 BNIP2Q12982 314 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 CLEC12BQ2HXU8 276 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 GCNT6Q5T4J0 391 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 SLC22A25Q6T423 547 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 GPAT4Q86UL3 456 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 LSMEM1Q8N8F7 131 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 ZIC4Q8N9L1 334 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 BHLHE22Q8NFJ8 381 aaPredicted RBP16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 EVA1AQ9H8M9 152 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 SLC52A3Q9NQ40 469 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 SLC17A5Q9NRA2 495 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 INTS9Q9NV88 658 aaKnown RBP16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 ADPRHL2Q9NX46 363 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 RPS6KB2Q9UBS0 482 aa16.75■□□□□ 0.27
CCDC28A-203ENST00000617445 PRORSD1PA6NEY8 169 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 ELOA3DA6NLF2 546 aaPredicted RBP16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 EVPLLA8MZ36 301 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 NR5A2O00482 541 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 OR2T1O43869 369 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 WNT11O96014 354 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 CD8AP01732 235 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 GPX2P18283 190 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 P2RY4P51582 365 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 PRPS1P60891 318 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 CDK6Q00534 326 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 SQLEQ14534 574 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 NRF1Q16656 503 aa16.74■□□□□ 0.27
CCDC28A-203ENST00000617445 ELOA3BQ3SY89 546 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms