RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CEACAM7Q14002 265 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 UGT3A2Q3SY77 523 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 CCDC153Q494R4 210 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 ABHD12BQ7Z5M8 362 aaPredicted RBP17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 NOA1Q8NC60 698 aaKnown RBP17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 NUP37Q8NFH4 326 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 CLDND2Q8NHS1 167 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 CKAP2Q8WWK9 683 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 XAGE5Q8WWM1 108 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 CNOT9Q92600 299 aaKnown RBP17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 RAB8BQ92930 207 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 DUSP26Q9BV47 211 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 ZNF442Q9H7R0 627 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 GRPEL1Q9HAV7 217 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 EXD2Q9NVH0 621 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 WDR45Q9Y484 360 aa17.56■□□□□ 0.4
SQSTM1-215ENST00000514093 RNF103-CHMP3A0A140T963 221 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 OR6C65A6NJZ3 312 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 ZNF587BE7ETH6 402 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 WNT9BO14905 357 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 ZNF208O43345 1280 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 RIPK2O43353 540 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 IGLV1-44P01699 117 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 CHRNGP07510 517 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 MAPK1P28482 360 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 POLR2HP52434 150 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 HILS1P60008 231 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 OR7A5Q15622 319 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 PGS1Q32NB8 556 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 IL23RQ5VWK5 629 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 FAHD2BQ6P2I3 314 aaPredicted RBP17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 NATD1Q8N6N6 113 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 PMM1Q92871 262 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 FAHD2AQ96GK7 314 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 LRRC37BQ96QE4 947 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 PRPF18Q99633 342 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 TREM2Q9NZC2 230 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 FBXO9Q9UK97 447 aaPredicted RBP17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 GRIP1Q9Y3R0 1128 aa17.55■□□□□ 0.4
SQSTM1-215ENST00000514093 ARPC4-TTLL3A0A0A6YYG9 625 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 VSTM5A8MXK1 200 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 UPK3AO75631 287 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 COL8A2P25067 703 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 HTR3AP46098 478 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 KCNJ10P78508 379 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 FUT5Q11128 374 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 FAM153CQ494X1 144 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 PDLIM3Q53GG5 364 aaPredicted RBP17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 AWAT1Q58HT5 328 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 TNFAIP8L2Q6P589 184 aaPredicted RBP17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 FRRS1Q6ZNA5 592 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 AGR3Q8TD06 166 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 PPP3R2Q96LZ3 170 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 C3orf30Q96M34 536 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 ANKRD27Q96NW4 1050 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 RBM4Q9BWF3 364 aaKnown RBP17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 SF3B5Q9BWJ5 86 aaKnown RBP17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 NELFAQ9H3P2 528 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 PCDHGB1Q9Y5G3 927 aa17.54■□□□□ 0.4
SQSTM1-215ENST00000514093 SCN2BO60939 215 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 LYPLA1O75608 230 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 MSMBP08118 114 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 TCN1P20061 433 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 EPHA1P21709 976 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 CCT5P48643 541 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 SCGB2A2Q13296 93 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 PRR31Q5SQ13 230 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 TMEM225Q6GV28 225 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 C1orf229Q6ZS94 237 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 RIMKLAQ8IXN7 391 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 ROPN1LQ96C74 230 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 EXOSC3Q9NQT5 275 aaKnown RBP17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 USP22Q9UPT9 525 aa17.53■□□□□ 0.4
SQSTM1-215ENST00000514093 LOC105371242A0A075B767 164 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 IGHV2OR16-5A0A0B4J2B6 119 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 LIPT2A6NK58 231 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 AQP7P3A6NL99 342 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 AVPP01185 164 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 IGKV3-15P01624 115 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 GPIP06744 558 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 PRPS1L1P21108 318 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 CRHR1P34998 444 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 GPR6P46095 362 aaPredicted RBP17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 KHKP50053 298 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 DEFA6Q01524 100 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 NPRL3Q12980 569 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 C3orf36Q3SXR2 165 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 ELFN2Q5R3F8 820 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 C6orf136Q5SQH8 315 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 ATAD3BQ5T9A4 648 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 AP1ARQ63HQ0 302 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 OR4F3Q6IEY1 312 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 KRT80Q6KB66 452 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 NIPAL3Q6P499 406 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 FNDC5Q8NAU1 212 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 ADPRHL2Q9NX46 363 aa17.52■□□□□ 0.4
SQSTM1-215ENST00000514093 TRRAPQ9Y4A5 3859 aa17.52■□□□□ 0.39
SQSTM1-215ENST00000514093 PRAMEF27A3QJZ7 478 aa17.51■□□□□ 0.39
SQSTM1-215ENST00000514093 ZNF503-AS2A6NEH8 195 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms