RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RAB3BP20337 219 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 PTBP1P26599 531 aaKnown RBP eCLIP16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 CD27P26842 260 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 GBX2P52951 348 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 SIRPAP78324 504 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 SF3A2Q15428 464 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 TRAM1Q15629 374 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 OR4D9Q8NGE8 314 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 ADAMTS18Q8TE60 1221 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 GAL3ST4Q96RP7 486 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 GFM1Q96RP9 751 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 NRIP3Q9NQ35 241 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 RPRD1BQ9NQG5 326 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 LANCL2Q9NS86 450 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 PRODH2Q9UF12 536 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 GMEB2Q9UKD1 530 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 ALG5Q9Y673 324 aa16.77■□□□□ 0.28
SHKBP1-201ENST00000291842 ALPK2Q86TB3 2170 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 TLCD2A6NGC4 264 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 LILRA5A6NI73 299 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 A6NL46 340 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 PPM1BO75688 479 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 F13BP05160 661 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 SNRPBP14678 240 aaKnown RBP16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 CD53P19397 219 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 EDNRAP25101 427 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 CDKN2AP42771 156 aaKnown RBP16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 MAGEB1P43366 347 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 DIO1P49895 249 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 SLC37A1P57057 533 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 CDK5R1Q15078 307 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 LEG1Q6P5S2 330 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 TPRA1Q86W33 373 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 RELTQ969Z4 430 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 SMIM19Q96E16 107 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 ABHD1Q96SE0 405 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 ADOQ96SZ5 270 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 THAP7Q9BT49 309 aaPredicted RBP16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 NCDNQ9UBB6 729 aa16.77■□□□□ 0.27
SHKBP1-201ENST00000291842 SPAG17Q6Q759 2223 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 BLACEA4D250 179 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 METTL12A8MUP2 240 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 EEF1E1O43324 174 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF217O75362 1048 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 UBL4AP11441 157 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 MST1P26927 711 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 SRP9P49458 86 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 AGFG1P52594 562 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 UBXN2BQ14CS0 331 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 COL13A1Q5TAT6 717 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 POMZP3Q6PJE2 187 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 TMEM151BQ8IW70 566 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 MS4A15Q8N5U1 240 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 POMGNT2Q8NAT1 580 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF511Q8NB15 262 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 OR14A16Q8NHC5 309 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 ZNF578Q96N58 590 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 UBL7Q96S82 380 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 DDOQ99489 341 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 RTN4RQ9BZR6 473 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 UBQLN4Q9NRR5 601 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 PLSCR3Q9NRY6 295 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 CUTCQ9NTM9 273 aa16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 AK6Q9Y3D8 172 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-201ENST00000291842 A0A087WV48 116 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 TMEM150CB9EJG8 249 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 FZD7O75084 574 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 OR2B3O76000 313 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 UTS2O95399 124 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 MYF5P13349 255 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 GRK6P43250 576 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 PITPNBP48739 271 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 OR1D5P58170 312 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 RPS11P62280 158 aaKnown RBP eCLIP16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 ACTA2P62736 377 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 ACTG2P63267 376 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 SERTAD2Q14140 314 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 GRM7Q14831 915 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 ZSWIM7Q19AV6 140 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 TCTE1Q5JU00 501 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 ESPNLQ6ZVH7 1005 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 DUSP18Q8NEJ0 188 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 OR2B2Q9GZK3 357 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 SLC2A4RGQ9NR83 387 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 RHPN2P1A8MT19 583 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 H0YIG0 161 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 SCDO00767 359 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 OGG1O15527 345 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 SRFP11831 508 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 ATF1P18846 271 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 NPR2P20594 1047 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 NUDT1P36639 197 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 RPS4XP62701 263 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 RACK1P63244 317 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 LGALS3BPQ08380 585 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 SKP2Q13309 424 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 GGTLC2Q14390 218 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 BCL2A1Q16548 175 aa16.75■□□□□ 0.27
SHKBP1-201ENST00000291842 CDONQ4KMG0 1287 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms