RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	SOGA3	Q5TF21	947 aa		33.91	■■■■□ 3.02
VEGFA-231	ENST00000640499	GRAPL	Q8TC17	118 aa	Predicted RBP	33.91	■■■■□ 3.02
VEGFA-231	ENST00000640499	CELF1	Q92879	486 aa	Known RBP	33.91	■■■■□ 3.02
VEGFA-231	ENST00000640499	LTBP3	Q9NS15	1303 aa		33.9	■■■■□ 3.02
VEGFA-231	ENST00000640499	SEC31B	Q9NQW1	1179 aa		33.9	■■■■□ 3.02
VEGFA-231	ENST00000640499	BCAR3	O75815	825 aa		33.89	■■■■□ 3.02
VEGFA-231	ENST00000640499	ALDH1L1	O75891	902 aa		33.89	■■■■□ 3.02
VEGFA-231	ENST00000640499	BBOX1	O75936	387 aa		33.89	■■■■□ 3.02
VEGFA-231	ENST00000640499	ZNF784	Q8NCA9	323 aa	Predicted RBP	33.89	■■■■□ 3.02
VEGFA-231	ENST00000640499	PLA2G12B	Q9BX93	195 aa		33.89	■■■■□ 3.02
VEGFA-231	ENST00000640499	SRCIN1	Q9C0H9	1055 aa		33.89	■■■■□ 3.02
VEGFA-231	ENST00000640499	TTLL11	Q8NHH1	800 aa		33.88	■■■■□ 3.01
VEGFA-231	ENST00000640499	CCDC85A	Q96PX6	553 aa	Predicted RBP	33.88	■■■■□ 3.01
VEGFA-231	ENST00000640499	TAOK3	Q9H2K8	898 aa		33.88	■■■■□ 3.01
VEGFA-231	ENST00000640499	RNF181	Q9P0P0	153 aa		33.88	■■■■□ 3.01
VEGFA-231	ENST00000640499	ATP6V0A2	Q9Y487	856 aa		33.88	■■■■□ 3.01
VEGFA-231	ENST00000640499	HSP90B1	P14625	803 aa	Known RBP	33.87	■■■■□ 3.01
VEGFA-231	ENST00000640499	LMNB1	P20700	586 aa		33.87	■■■■□ 3.01
VEGFA-231	ENST00000640499	CTSW	P56202	376 aa		33.87	■■■■□ 3.01
VEGFA-231	ENST00000640499	RTKN2	Q8IZC4	609 aa		33.86	■■■■□ 3.01
VEGFA-231	ENST00000640499	MYH3	P11055	1940 aa		33.86	■■■■□ 3.01
VEGFA-231	ENST00000640499	FKBP4	Q02790	459 aa	Known RBP eCLIP	33.85	■■■■□ 3.01
VEGFA-231	ENST00000640499	CC2D2B	Q6DHV5	1058 aa		33.85	■■■■□ 3.01
VEGFA-231	ENST00000640499	SP8	Q8IXZ3	490 aa		33.85	■■■■□ 3.01
VEGFA-231	ENST00000640499	GRM8	O00222	908 aa		33.84	■■■■□ 3.01
VEGFA-231	ENST00000640499	CCDC152	Q4G0S7	254 aa		33.84	■■■■□ 3.01
VEGFA-231	ENST00000640499	CSF1R	P07333	972 aa		33.83	■■■■□ 3.01
VEGFA-231	ENST00000640499	FOXO4	P98177	505 aa		33.83	■■■■□ 3.01
VEGFA-231	ENST00000640499	EPHA10	Q5JZY3	1008 aa		33.82	■■■■□ 3
VEGFA-231	ENST00000640499	GREM2	Q9H772	168 aa		33.82	■■■■□ 3
VEGFA-231	ENST00000640499	UTY	O14607	1347 aa		33.81	■■■■□ 3
VEGFA-231	ENST00000640499	DICER1	Q9UPY3	1922 aa	Known RBP	33.81	■■■■□ 3
VEGFA-231	ENST00000640499	NBPF7	P0C2Y1	421 aa	Predicted RBP	33.81	■■■■□ 3
VEGFA-231	ENST00000640499	RPS8	P62241	208 aa	Known RBP	33.81	■■■■□ 3
VEGFA-231	ENST00000640499	KAZALD1	Q96I82	304 aa		33.81	■■■■□ 3
VEGFA-231	ENST00000640499	ZNF277	Q9NRM2	450 aa	Predicted RBP	33.81	■■■■□ 3
VEGFA-231	ENST00000640499	TNN	Q9UQP3	1299 aa		33.81	■■■■□ 3
VEGFA-231	ENST00000640499	LRRC37A	A6NMS7	1700 aa		33.81	■■■■□ 3
VEGFA-231	ENST00000640499	ARHGAP45	Q92619	1136 aa		33.8	■■■■□ 3
VEGFA-231	ENST00000640499	PSMD1	Q99460	953 aa		33.8	■■■■□ 3
VEGFA-231	ENST00000640499	RTL9	Q8NET4	1388 aa		33.8	■■■■□ 3
VEGFA-231	ENST00000640499	API5	Q9BZZ5	524 aa	Known RBP	33.79	■■■■□ 3
VEGFA-231	ENST00000640499	C9orf78	Q9NZ63	289 aa	Predicted RBP	33.79	■■■■□ 3
VEGFA-231	ENST00000640499	USP44	Q9H0E7	712 aa		33.78	■■■■□ 3
VEGFA-231	ENST00000640499	KIF16B	Q96L93	1317 aa		33.77	■■■■□ 3
VEGFA-231	ENST00000640499	GRIPAP1	Q4V328	841 aa		33.76	■■■□□ 2.99
VEGFA-231	ENST00000640499	TMC4	Q7Z404	712 aa		33.76	■■■□□ 2.99
VEGFA-231	ENST00000640499	SUCLG2	Q96I99	432 aa		33.76	■■■□□ 2.99
VEGFA-231	ENST00000640499	COL4A5	P29400	1685 aa		33.76	■■■□□ 2.99
VEGFA-231	ENST00000640499	TIAM2	Q8IVF5	1701 aa		33.76	■■■□□ 2.99
VEGFA-231	ENST00000640499	FAM161A	Q3B820	660 aa		33.75	■■■□□ 2.99
VEGFA-231	ENST00000640499	RTFDC1	Q9BY42	306 aa	Predicted RBP	33.75	■■■□□ 2.99
VEGFA-231	ENST00000640499	DUOX1	Q9NRD9	1551 aa		33.74	■■■□□ 2.99
VEGFA-231	ENST00000640499	TRIM27	P14373	513 aa		33.73	■■■□□ 2.99
VEGFA-231	ENST00000640499	IARS	P41252	1262 aa	Known RBP	33.73	■■■□□ 2.99
VEGFA-231	ENST00000640499	MPND	Q8N594	471 aa		33.73	■■■□□ 2.99
VEGFA-231	ENST00000640499	ZNF526	Q8TF50	670 aa	Predicted RBP	33.73	■■■□□ 2.99
VEGFA-231	ENST00000640499	LTBP1	Q14766	1721 aa		33.73	■■■□□ 2.99
VEGFA-231	ENST00000640499	CCT4	P50991	539 aa	Known RBP	33.72	■■■□□ 2.99
VEGFA-231	ENST00000640499	GPSM2	P81274	684 aa		33.72	■■■□□ 2.99
VEGFA-231	ENST00000640499	FRAT1	Q92837	279 aa	Predicted RBP	33.72	■■■□□ 2.99
VEGFA-231	ENST00000640499	ITGA6	P23229	1130 aa		33.71	■■■□□ 2.99
VEGFA-231	ENST00000640499	LMBR1L	Q6UX01	489 aa		33.71	■■■□□ 2.99
VEGFA-231	ENST00000640499	ATF7IP	Q6VMQ6	1270 aa		33.71	■■■□□ 2.99
VEGFA-231	ENST00000640499	ANKRD18A	Q8IVF6	992 aa		33.71	■■■□□ 2.99
VEGFA-231	ENST00000640499	ZC3H4	Q9UPT8	1303 aa	Known RBP	33.71	■■■□□ 2.99
VEGFA-231	ENST00000640499	DPP8	Q6V1X1	898 aa	Predicted RBP	33.7	■■■□□ 2.99
VEGFA-231	ENST00000640499	INTS3	Q68E01	1043 aa	Known RBP	33.69	■■■□□ 2.98
VEGFA-231	ENST00000640499	TMX4	Q9H1E5	349 aa	Predicted RBP	33.69	■■■□□ 2.98
VEGFA-231	ENST00000640499	SPEF2	Q9C093	1822 aa		33.69	■■■□□ 2.98
VEGFA-231	ENST00000640499	IPO8	O15397	1037 aa	Known RBP	33.68	■■■□□ 2.98
VEGFA-231	ENST00000640499	ANKRD44	Q8N8A2	993 aa		33.68	■■■□□ 2.98
VEGFA-231	ENST00000640499	CDC5L	Q99459	802 aa	Known RBP	33.68	■■■□□ 2.98
VEGFA-231	ENST00000640499	POLL	Q9UGP5	575 aa		33.67	■■■□□ 2.98
VEGFA-231	ENST00000640499	NSFL1C	Q9UNZ2	370 aa	Known RBP	33.67	■■■□□ 2.98
VEGFA-231	ENST00000640499	BICC1	Q9H694	974 aa	Known RBP	33.66	■■■□□ 2.98
VEGFA-231	ENST00000640499	BSDC1	Q9NW68	430 aa	Predicted RBP	33.66	■■■□□ 2.98
VEGFA-231	ENST00000640499	RABL6	Q3YEC7	729 aa	Predicted RBP	33.65	■■■□□ 2.98
VEGFA-231	ENST00000640499	ZKSCAN2	Q63HK3	967 aa		33.65	■■■□□ 2.98
VEGFA-231	ENST00000640499	CLUAP1	Q96AJ1	413 aa		33.65	■■■□□ 2.98
VEGFA-231	ENST00000640499	PODXL2	Q9NZ53	605 aa		33.65	■■■□□ 2.98
VEGFA-231	ENST00000640499	GLTPD2	A6NH11	291 aa		33.64	■■■□□ 2.98
VEGFA-231	ENST00000640499	AOC3	Q16853	763 aa		33.64	■■■□□ 2.98
VEGFA-231	ENST00000640499	GPBP1L1	Q9HC44	474 aa	Predicted RBP	33.64	■■■□□ 2.98
VEGFA-231	ENST00000640499	MINPP1	Q9UNW1	487 aa		33.64	■■■□□ 2.98
VEGFA-231	ENST00000640499	ANKRD18B	A2A2Z9	1011 aa		33.63	■■■□□ 2.97
VEGFA-231	ENST00000640499	WTIP	A6NIX2	430 aa	Predicted RBP	33.63	■■■□□ 2.97
VEGFA-231	ENST00000640499	FZD9	O00144	591 aa		33.63	■■■□□ 2.97
VEGFA-231	ENST00000640499	SUPT20H	Q8NEM7	779 aa		33.63	■■■□□ 2.97
VEGFA-231	ENST00000640499	TBC1D16	Q8TBP0	767 aa		33.63	■■■□□ 2.97
VEGFA-231	ENST00000640499	IFIT5	Q13325	482 aa	Known RBP	33.62	■■■□□ 2.97
VEGFA-231	ENST00000640499	GPR101	Q96P66	508 aa	Predicted RBP	33.62	■■■□□ 2.97
VEGFA-231	ENST00000640499	VPS33B	Q9H267	617 aa		33.62	■■■□□ 2.97
VEGFA-231	ENST00000640499	NMRK2	Q9NPI5	230 aa		33.62	■■■□□ 2.97
VEGFA-231	ENST00000640499	CHMP3	Q9Y3E7	222 aa		33.62	■■■□□ 2.97
VEGFA-231	ENST00000640499	ZNF541	Q9H0D2	1346 aa		33.61	■■■□□ 2.97
VEGFA-231	ENST00000640499	PPIP5K2	O43314	1243 aa		33.61	■■■□□ 2.97
VEGFA-231	ENST00000640499	LARGE2	Q8N3Y3	721 aa		33.61	■■■□□ 2.97
VEGFA-231	ENST00000640499	ZNF594	Q96JF6	807 aa	Predicted RBP	33.61	■■■□□ 2.97
VEGFA-231	ENST00000640499	YTHDC1	Q96MU7	727 aa	Known RBP	33.61	■■■□□ 2.97

Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms