RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 PTPN12Q05209 780 aaKnown RBP17.76■□□□□ 0.43
CLN3-253ENST00000636977 C1orf167Q5SNV9 1468 aa17.76■□□□□ 0.43
CLN3-253ENST00000636977 CSB-PGBD3P0DP91 1061 aa17.76■□□□□ 0.43
CLN3-253ENST00000636977 TATP17735 454 aaPredicted RBP17.76■□□□□ 0.43
CLN3-253ENST00000636977 BLOC1S2Q6QNY1 142 aa17.76■□□□□ 0.43
CLN3-253ENST00000636977 SNRKQ9NRH2 765 aa17.76■□□□□ 0.43
CLN3-253ENST00000636977 ADAMTS7Q9UKP4 1686 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 AP5Z1O43299 807 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 TAF5LO75529 589 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 TPM2P07951 284 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 TTC6Q86TZ1 520 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 ATP6V1DQ9Y5K8 247 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 ADCY5O95622 1261 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 RPS6KB1P23443 525 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 DNAJC2Q99543 621 aaKnown RBP17.75■□□□□ 0.43
CLN3-253ENST00000636977 DBNDD2Q9BQY9 259 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 FUCA2Q9BTY2 467 aa17.75■□□□□ 0.43
CLN3-253ENST00000636977 ZNF142P52746 1687 aaPredicted RBP17.74■□□□□ 0.43
CLN3-253ENST00000636977 HIP1O00291 1037 aa17.74■□□□□ 0.43
CLN3-253ENST00000636977 PLCB2Q00722 1185 aa17.74■□□□□ 0.43
CLN3-253ENST00000636977 TNNI3KQ59H18 835 aa17.74■□□□□ 0.43
CLN3-253ENST00000636977 C17orf53Q8N3J3 647 aaPredicted RBP17.74■□□□□ 0.43
CLN3-253ENST00000636977 FPGT-TNNI3KV9GXZ4 949 aa17.74■□□□□ 0.43
CLN3-253ENST00000636977 TFIP11Q9UBB9 837 aaKnown RBP17.74■□□□□ 0.43
CLN3-253ENST00000636977 BBXQ8WY36 941 aaPredicted RBP17.73■□□□□ 0.43
CLN3-253ENST00000636977 TTC12Q9H892 705 aaPredicted RBP17.73■□□□□ 0.43
CLN3-253ENST00000636977 PSMA5P28066 241 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 COPRSQ9NQ92 184 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 SCN11AQ9UI33 1791 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 A0A087WZG4 1122 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 JAK2O60674 1132 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 SNRPA1P09661 255 aaKnown RBP17.73■□□□□ 0.43
CLN3-253ENST00000636977 CAMK4Q16566 473 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 DDX46Q7L014 1031 aaKnown RBP17.73■□□□□ 0.43
CLN3-253ENST00000636977 IFNL2Q8IZJ0 200 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 LRRC2Q9BYS8 371 aa17.73■□□□□ 0.43
CLN3-253ENST00000636977 LIG1P18858 919 aa17.72■□□□□ 0.43
CLN3-253ENST00000636977 TTC5Q8N0Z6 440 aa17.72■□□□□ 0.43
CLN3-253ENST00000636977 PDIA4P13667 645 aaKnown RBP17.72■□□□□ 0.43
CLN3-253ENST00000636977 FAM184AQ8NB25 1140 aa17.71■□□□□ 0.43
CLN3-253ENST00000636977 C19orf44Q9H6X5 657 aa17.71■□□□□ 0.43
CLN3-253ENST00000636977 ZNF609O15014 1411 aa17.71■□□□□ 0.43
CLN3-253ENST00000636977 ATP5JP18859 108 aa17.71■□□□□ 0.43
CLN3-253ENST00000636977 RNF20Q5VTR2 975 aa17.71■□□□□ 0.43
CLN3-253ENST00000636977 MCM5P33992 734 aa17.7■□□□□ 0.42
CLN3-253ENST00000636977 DDX11Q96FC9 970 aa17.7■□□□□ 0.42
CLN3-253ENST00000636977 MRC1P22897 1456 aa17.7■□□□□ 0.42
CLN3-253ENST00000636977 UVSSAQ2YD98 709 aa17.7■□□□□ 0.42
CLN3-253ENST00000636977 LMBR1LQ6UX01 489 aa17.7■□□□□ 0.42
CLN3-253ENST00000636977 A0A0G2JLW4 131 aa17.7■□□□□ 0.42
CLN3-253ENST00000636977 JCADQ9P266 1359 aa17.69■□□□□ 0.42
CLN3-253ENST00000636977 KDM4AO75164 1064 aa17.69■□□□□ 0.42
CLN3-253ENST00000636977 LETM1O95202 739 aaPredicted RBP17.69■□□□□ 0.42
CLN3-253ENST00000636977 PPFIA3O75145 1194 aa17.69■□□□□ 0.42
CLN3-253ENST00000636977 CYP21A2P08686 494 aa17.69■□□□□ 0.42
CLN3-253ENST00000636977 CASP7P55210 303 aa17.69■□□□□ 0.42
CLN3-253ENST00000636977 RABL6Q3YEC7 729 aaPredicted RBP17.69■□□□□ 0.42
CLN3-253ENST00000636977 FMNL2Q96PY5 1086 aa17.69■□□□□ 0.42
CLN3-253ENST00000636977 UQCRHLA0A096LP55 91 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 NBPF26B4DH59 902 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 UQCRHP07919 91 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 NBPF14Q5TI25 921 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 USPL1Q5W0Q7 1092 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 NBPF10Q6P3W6 841 aaKnown RBP17.68■□□□□ 0.42
CLN3-253ENST00000636977 NBPF15Q8N660 670 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 DCAF5Q96JK2 942 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 CABP4P57796 275 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 KRT85P78386 507 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 TTLL7Q6ZT98 887 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 ALS2Q96Q42 1657 aa17.68■□□□□ 0.42
CLN3-253ENST00000636977 Q6ZUG5 572 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 STOX1Q6ZVD7 989 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 CKAP2LQ8IYA6 745 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 FOSBP53539 338 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 TIMM10P62072 90 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 KIAA2012Q0VF49 1180 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 NEK1Q96PY6 1258 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 AFDNP55196 1824 aaKnown RBP17.67■□□□□ 0.42
CLN3-253ENST00000636977 CSPP1Q1MSJ5 1256 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 TSGA10IPQ3SY00 556 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 NEUROD6Q96NK8 337 aa17.67■□□□□ 0.42
CLN3-253ENST00000636977 FOXO4P98177 505 aa17.66■□□□□ 0.42
CLN3-253ENST00000636977 ANKRD1Q15327 319 aa17.66■□□□□ 0.42
CLN3-253ENST00000636977 ZNF594Q96JF6 807 aaPredicted RBP17.66■□□□□ 0.42
CLN3-253ENST00000636977 HAUS7Q99871 368 aa17.66■□□□□ 0.42
CLN3-253ENST00000636977 DACT1Q9NYF0 836 aa17.66■□□□□ 0.42
CLN3-253ENST00000636977 HMG20BQ9P0W2 317 aa17.66■□□□□ 0.42
CLN3-253ENST00000636977 SPC24Q8NBT2 197 aa17.65■□□□□ 0.42
CLN3-253ENST00000636977 LMTK3Q96Q04 1460 aa17.65■□□□□ 0.42
CLN3-253ENST00000636977 GOLIM4O00461 696 aa17.65■□□□□ 0.42
CLN3-253ENST00000636977 ATF3P18847 181 aa17.65■□□□□ 0.42
CLN3-253ENST00000636977 ATG9AQ7Z3C6 839 aa17.65■□□□□ 0.42
CLN3-253ENST00000636977 BRF1Q92994 677 aa17.65■□□□□ 0.42
CLN3-253ENST00000636977 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-253ENST00000636977 A1BGP04217 495 aa17.64■□□□□ 0.42
CLN3-253ENST00000636977 HSP90B1P14625 803 aaKnown RBP17.64■□□□□ 0.42
CLN3-253ENST00000636977 MCMDC2Q4G0Z9 681 aa17.64■□□□□ 0.42
CLN3-253ENST00000636977 PLBD2Q8NHP8 589 aa17.64■□□□□ 0.42
CLN3-253ENST00000636977 LEO1Q8WVC0 666 aaPredicted RBP17.64■□□□□ 0.42
CLN3-253ENST00000636977 GTF3C6Q969F1 213 aa17.64■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms