RNA–Protein interactions for RNA: ENST00000626000.1

SNRPA1-216, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 5 BASIC

Gene SNRPA1, Length 539 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-216ENST00000626000 SBF1O95248 1867 aa17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 RTL9Q8NET4 1388 aa17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 RARSP54136 660 aaKnown RBP17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 SLC4A10Q6U841 1118 aa17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 UBE3BQ7Z3V4 1068 aa17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 ARHGAP45Q92619 1136 aa17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 PSMD1Q99460 953 aa17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 PLA2G12BQ9BX93 195 aa17.72■□□□□ 0.43
SNRPA1-216ENST00000626000 F6X3S4 739 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 NFKBIEO00221 500 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 GRM8O00222 908 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 CTSWP56202 376 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 FKBP4Q02790 459 aaKnown RBP eCLIP17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 RTL5Q5HYW3 569 aaPredicted RBP17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 C9orf131Q5VYM1 1079 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 C3orf67Q6ZVT6 689 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 SYNE4Q8N205 404 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 SUPT20HQ8NEM7 779 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 CDC5LQ99459 802 aaKnown RBP17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 VPS33BQ9H267 617 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 C9orf78Q9NZ63 289 aaPredicted RBP17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 RNF181Q9P0P0 153 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 HDAC5Q9UQL6 1122 aa17.71■□□□□ 0.43
SNRPA1-216ENST00000626000 CCT4P50991 539 aaKnown RBP17.7■□□□□ 0.42
SNRPA1-216ENST00000626000 SP8Q8IXZ3 490 aa17.7■□□□□ 0.42
SNRPA1-216ENST00000626000 BCL2L13Q9BXK5 485 aa17.7■□□□□ 0.42
SNRPA1-216ENST00000626000 ZNF219Q9P2Y4 722 aaPredicted RBP17.7■□□□□ 0.42
SNRPA1-216ENST00000626000 DICER1Q9UPY3 1922 aaKnown RBP17.69■□□□□ 0.42
SNRPA1-216ENST00000626000 LRRC37AA6NMS7 1700 aa17.68■□□□□ 0.42
SNRPA1-216ENST00000626000 RPS8P62241 208 aaKnown RBP17.68■□□□□ 0.42
SNRPA1-216ENST00000626000 KDM2BQ8NHM5 1336 aa17.68■□□□□ 0.42
SNRPA1-216ENST00000626000 RASSF7Q02833 373 aa17.67■□□□□ 0.42
SNRPA1-216ENST00000626000 ZNF784Q8NCA9 323 aaPredicted RBP17.67■□□□□ 0.42
SNRPA1-216ENST00000626000 TIAM2Q8IVF5 1701 aa17.67■□□□□ 0.42
SNRPA1-216ENST00000626000 SNED1Q8TER0 1413 aa17.66■□□□□ 0.42
SNRPA1-216ENST00000626000 CASP7P55210 303 aa17.66■□□□□ 0.42
SNRPA1-216ENST00000626000 ANKRD18AQ8IVF6 992 aa17.66■□□□□ 0.42
SNRPA1-216ENST00000626000 TTLL11Q8NHH1 800 aa17.66■□□□□ 0.42
SNRPA1-216ENST00000626000 NOB1Q9ULX3 412 aaKnown RBP17.66■□□□□ 0.42
SNRPA1-216ENST00000626000 CCDC88AQ3V6T2 1871 aa17.66■□□□□ 0.42
SNRPA1-216ENST00000626000 UTYO14607 1347 aa17.66■□□□□ 0.42
SNRPA1-216ENST00000626000 DPY19L2Q6NUT2 758 aa17.65■□□□□ 0.42
SNRPA1-216ENST00000626000 DPP8Q6V1X1 898 aaPredicted RBP17.65■□□□□ 0.42
SNRPA1-216ENST00000626000 MPNDQ8N594 471 aa17.65■□□□□ 0.42
SNRPA1-216ENST00000626000 JDP2Q8WYK2 163 aa17.65■□□□□ 0.42
SNRPA1-216ENST00000626000 GPBP1L1Q9HC44 474 aaPredicted RBP17.65■□□□□ 0.42
SNRPA1-216ENST00000626000 CSF1RP07333 972 aa17.64■□□□□ 0.41
SNRPA1-216ENST00000626000 IARSP41252 1262 aaKnown RBP17.64■□□□□ 0.41
SNRPA1-216ENST00000626000 RTFDC1Q9BY42 306 aaPredicted RBP17.64■□□□□ 0.41
SNRPA1-216ENST00000626000 IGHMBP2P38935 993 aaKnown RBP17.63■□□□□ 0.41
SNRPA1-216ENST00000626000 CELF1Q92879 486 aaKnown RBP17.63■□□□□ 0.41
SNRPA1-216ENST00000626000 ANKRD18BA2A2Z9 1011 aa17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 IFIT5Q13325 482 aaKnown RBP17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 ZKSCAN2Q63HK3 967 aa17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 ATF7IPQ6VMQ6 1270 aa17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 JARID2Q92833 1246 aaPredicted RBP17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 EYA3Q99504 573 aa17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 GREM2Q9H772 168 aa17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 BSDC1Q9NW68 430 aaPredicted RBP17.62■□□□□ 0.41
SNRPA1-216ENST00000626000 MS4A1P11836 297 aa17.61■□□□□ 0.41
SNRPA1-216ENST00000626000 CCDC57Q2TAC2 916 aa17.61■□□□□ 0.41
SNRPA1-216ENST00000626000 MPHOSPH8Q99549 860 aa17.61■□□□□ 0.41
SNRPA1-216ENST00000626000 ZNF277Q9NRM2 450 aaPredicted RBP17.61■□□□□ 0.41
SNRPA1-216ENST00000626000 PODXL2Q9NZ53 605 aa17.61■□□□□ 0.41
SNRPA1-216ENST00000626000 GLTPD2A6NH11 291 aa17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 ITGA6P23229 1130 aa17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 INTS3Q68E01 1043 aaKnown RBP17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 LARGE2Q8N3Y3 721 aa17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 SEC31BQ9NQW1 1179 aa17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 NSFL1CQ9UNZ2 370 aaKnown RBP17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 XDHP47989 1333 aa17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 TAF1P21675 1872 aa17.6■□□□□ 0.41
SNRPA1-216ENST00000626000 PPIP5K2O43314 1243 aa17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 UBTFL1P0CB47 393 aaPredicted RBP17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 FOXO4P98177 505 aa17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 FAM161AQ3B820 660 aa17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 OLFM4Q6UX06 510 aa17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 NIM1KQ8IY84 436 aa17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 FRAT1Q92837 279 aaPredicted RBP17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 ANKRD2Q9GZV1 360 aa17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 ANKIB1Q9P2G1 1089 aa17.59■□□□□ 0.41
SNRPA1-216ENST00000626000 GNAI3P08754 354 aa17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 NBPF7P0C2Y1 421 aaPredicted RBP17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 TRIM27P14373 513 aa17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 EIF6P56537 245 aaKnown RBP17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 KIAA2012Q0VF49 1180 aa17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 RABL6Q3YEC7 729 aaPredicted RBP17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 TAF7LQ5H9L4 462 aa17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 LMBR1LQ6UX01 489 aa17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 CCDC85AQ96PX6 553 aaPredicted RBP17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 USP44Q9H0E7 712 aa17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 CHMP3Q9Y3E7 222 aa17.58■□□□□ 0.4
SNRPA1-216ENST00000626000 BCAR3O75815 825 aa17.57■□□□□ 0.4
SNRPA1-216ENST00000626000 ATP2B4P23634 1241 aa17.57■□□□□ 0.4
SNRPA1-216ENST00000626000 PRELPP51888 382 aa17.57■□□□□ 0.4
SNRPA1-216ENST00000626000 FTSJ3Q8IY81 847 aaKnown RBP17.57■□□□□ 0.4
SNRPA1-216ENST00000626000 GGA1Q9UJY5 639 aa17.57■□□□□ 0.4
SNRPA1-216ENST00000626000 LTBP1Q14766 1721 aa17.57■□□□□ 0.4
SNRPA1-216ENST00000626000 C6orf229H3BNL8 230 aa17.56■□□□□ 0.4
SNRPA1-216ENST00000626000 FZD9O00144 591 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms