RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 EDC3Q96F86 508 aaKnown RBP23.72■■□□□ 1.39
PCDHB11-202ENST00000624887 CCDC9Q9Y3X0 531 aaKnown RBP23.72■■□□□ 1.39
PCDHB11-202ENST00000624887 BARGINQ6ZT62 677 aa23.72■■□□□ 1.39
PCDHB11-202ENST00000624887 PLA2G12BQ9BX93 195 aa23.72■■□□□ 1.39
PCDHB11-202ENST00000624887 CASTP20810 708 aaKnown RBP23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 AK2P54819 239 aa23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 L1TD1Q5T7N2 865 aaKnown RBP23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 ZBTB38Q8NAP3 1195 aaPredicted RBP23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 FSD2A1L4K1 749 aa23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 ZKSCAN1P17029 563 aaPredicted RBP23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 DDB1Q16531 1140 aa23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 CREB3L3Q68CJ9 461 aa23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 DOT1LQ8TEK3 1739 aa23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 SYTL4Q96C24 671 aaPredicted RBP23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 ZSWIM6Q9HCJ5 1215 aa23.71■■□□□ 1.39
PCDHB11-202ENST00000624887 BCL9LQ86UU0 1499 aa23.7■■□□□ 1.38
PCDHB11-202ENST00000624887 LRRC24Q50LG9 513 aa23.7■■□□□ 1.38
PCDHB11-202ENST00000624887 FNBP4Q8N3X1 1017 aaPredicted RBP23.7■■□□□ 1.38
PCDHB11-202ENST00000624887 ZNF594Q96JF6 807 aaPredicted RBP23.7■■□□□ 1.38
PCDHB11-202ENST00000624887 FBXO3Q9UK99 471 aa23.7■■□□□ 1.38
PCDHB11-202ENST00000624887 LIMCH1Q9UPQ0 1083 aa23.7■■□□□ 1.38
PCDHB11-202ENST00000624887 ZNF609O15014 1411 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 PRIM1P49642 420 aaKnown RBP23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 ADCK5Q3MIX3 580 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 JAKMIP1Q96N16 626 aaKnown RBP23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 BRD1O95696 1058 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 HSPA1LP34931 641 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 KCNJ4P48050 445 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 CCDC57Q2TAC2 916 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 HSP90AB3PQ58FF7 597 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 VPS53Q5VIR6 699 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 MCTP1Q6DN14 999 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 RUFY3Q7L099 469 aa23.69■■□□□ 1.38
PCDHB11-202ENST00000624887 GOLGA6L3A6NEY3 463 aa23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 VPS72Q15906 364 aa23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 HLFQ16534 295 aa23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 ZNF589Q86UQ0 364 aaPredicted RBP23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 FAM89AQ96GI7 184 aa23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 NEUROD6Q96NK8 337 aa23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 DNAJC2Q99543 621 aaKnown RBP23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 ZBTB1Q9Y2K1 713 aa23.68■■□□□ 1.38
PCDHB11-202ENST00000624887 CSF1RP07333 972 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 TIMM10P62072 90 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 ARXQ96QS3 562 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 CYP46A1Q9Y6A2 500 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 ANKRD36CQ5JPF3 1778 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 CDHR2Q9BYE9 1310 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 SLC27A2O14975 620 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 RNF20Q5VTR2 975 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 TICAM2Q86XR7 235 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 NDUFB9Q9Y6M9 179 aa23.67■■□□□ 1.38
PCDHB11-202ENST00000624887 RPAP1Q9BWH6 1393 aaPredicted RBP23.66■■□□□ 1.38
PCDHB11-202ENST00000624887 CPA1P15085 419 aa23.66■■□□□ 1.38
PCDHB11-202ENST00000624887 KLHL40Q2TBA0 621 aa23.66■■□□□ 1.38
PCDHB11-202ENST00000624887 NLRP10Q86W26 655 aa23.66■■□□□ 1.38
PCDHB11-202ENST00000624887 KBTBD3Q8NAB2 608 aa23.66■■□□□ 1.38
PCDHB11-202ENST00000624887 PUS3Q9BZE2 481 aaKnown RBP23.66■■□□□ 1.38
PCDHB11-202ENST00000624887 PDRG1Q9NUG6 133 aa23.66■■□□□ 1.38
PCDHB11-202ENST00000624887 TAF5LO75529 589 aa23.65■■□□□ 1.38
PCDHB11-202ENST00000624887 LMBRD1Q9NUN5 540 aa23.65■■□□□ 1.38
PCDHB11-202ENST00000624887 IL6STP40189 918 aaPredicted RBP23.65■■□□□ 1.38
PCDHB11-202ENST00000624887 CEP126Q9P2H0 1117 aa23.65■■□□□ 1.38
PCDHB11-202ENST00000624887 PALLDQ8WX93 1383 aa23.65■■□□□ 1.38
PCDHB11-202ENST00000624887 A0A1B0GUL7 405 aa23.64■■□□□ 1.38
PCDHB11-202ENST00000624887 PSMA5P28066 241 aa23.64■■□□□ 1.38
PCDHB11-202ENST00000624887 USPL1Q5W0Q7 1092 aa23.64■■□□□ 1.38
PCDHB11-202ENST00000624887 DDX46Q7L014 1031 aaKnown RBP23.64■■□□□ 1.38
PCDHB11-202ENST00000624887 HMG20BQ9P0W2 317 aa23.64■■□□□ 1.38
PCDHB11-202ENST00000624887 ISY1Q9ULR0 285 aaKnown RBP23.64■■□□□ 1.38
PCDHB11-202ENST00000624887 ERVV-1B6SEH8 477 aa23.63■■□□□ 1.37
PCDHB11-202ENST00000624887 TSGA10IPQ3SY00 556 aa23.63■■□□□ 1.37
PCDHB11-202ENST00000624887 DDX49Q9Y6V7 483 aaKnown RBP23.63■■□□□ 1.37
PCDHB11-202ENST00000624887 NUP98P52948 1817 aa23.63■■□□□ 1.37
PCDHB11-202ENST00000624887 GPTP24298 496 aa23.63■■□□□ 1.37
PCDHB11-202ENST00000624887 PAG1Q9NWQ8 432 aa23.63■■□□□ 1.37
PCDHB11-202ENST00000624887 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.63■■□□□ 1.37
PCDHB11-202ENST00000624887 IFIT5Q13325 482 aaKnown RBP23.62■■□□□ 1.37
PCDHB11-202ENST00000624887 MCMDC2Q4G0Z9 681 aa23.62■■□□□ 1.37
PCDHB11-202ENST00000624887 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.62■■□□□ 1.37
PCDHB11-202ENST00000624887 ZSCAN31Q96LW9 406 aaPredicted RBP23.62■■□□□ 1.37
PCDHB11-202ENST00000624887 BRPF3Q9ULD4 1205 aa23.62■■□□□ 1.37
PCDHB11-202ENST00000624887 SPEF2Q9C093 1822 aa23.62■■□□□ 1.37
PCDHB11-202ENST00000624887 MARCH10Q8NA82 808 aaPredicted RBP23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 SH2B1Q9NRF2 756 aaPredicted RBP23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 USP21Q9UK80 565 aa23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 AKAP2Q9Y2D5 859 aa23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 SH3TC1Q8TE82 1336 aa23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 FAM98CQ17RN3 349 aaKnown RBP23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 DZIP3Q86Y13 1208 aaKnown RBP23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 LARP6Q9BRS8 491 aaKnown RBP23.61■■□□□ 1.37
PCDHB11-202ENST00000624887 GOLIM4O00461 696 aa23.6■■□□□ 1.37
PCDHB11-202ENST00000624887 TAF7LQ5H9L4 462 aa23.6■■□□□ 1.37
PCDHB11-202ENST00000624887 SYNE4Q8N205 404 aa23.6■■□□□ 1.37
PCDHB11-202ENST00000624887 MYH3P11055 1940 aa23.6■■□□□ 1.37
PCDHB11-202ENST00000624887 FOXD4L5Q5VV16 416 aaPredicted RBP23.6■■□□□ 1.37
PCDHB11-202ENST00000624887 TTLL11Q8NHH1 800 aa23.6■■□□□ 1.37
PCDHB11-202ENST00000624887 FOXD4L4Q8WXT5 416 aaPredicted RBP23.6■■□□□ 1.37
PCDHB11-202ENST00000624887 WDR33Q9C0J8 1336 aaKnown RBP23.59■■□□□ 1.37
PCDHB11-202ENST00000624887 LARGE1O95461 756 aa23.59■■□□□ 1.37
PCDHB11-202ENST00000624887 CHGBP05060 677 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms