RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 HSPA1AP0DMV8 641 aaKnown RBP15.41■□□□□ 0.06
UPF3B-204ENST00000619445 HSPA1BP0DMV9 641 aaKnown RBP15.41■□□□□ 0.06
UPF3B-204ENST00000619445 KIAA2012Q0VF49 1180 aa15.41■□□□□ 0.06
UPF3B-204ENST00000619445 TNIP1Q15025 636 aa15.41■□□□□ 0.06
UPF3B-204ENST00000619445 SF3B3Q15393 1217 aaKnown RBP15.41■□□□□ 0.06
UPF3B-204ENST00000619445 DDX58O95786 925 aaKnown RBP15.4■□□□□ 0.06
UPF3B-204ENST00000619445 AOC3Q16853 763 aa15.4■□□□□ 0.06
UPF3B-204ENST00000619445 RIC3Q7Z5B4 369 aa15.4■□□□□ 0.06
UPF3B-204ENST00000619445 ADARB2Q9NS39 739 aaKnown RBP15.4■□□□□ 0.06
UPF3B-204ENST00000619445 MKRN1Q9UHC7 482 aaKnown RBP15.4■□□□□ 0.06
UPF3B-204ENST00000619445 COL4A5P29400 1685 aa15.4■□□□□ 0.06
UPF3B-204ENST00000619445 LRRC37AA6NMS7 1700 aa15.39■□□□□ 0.05
UPF3B-204ENST00000619445 DDX60Q8IY21 1712 aaKnown RBP15.39■□□□□ 0.05
UPF3B-204ENST00000619445 SCNN1DP51172 638 aa15.39■□□□□ 0.05
UPF3B-204ENST00000619445 CCDC30Q5VVM6 783 aa15.39■□□□□ 0.05
UPF3B-204ENST00000619445 ZEB1P37275 1124 aaPredicted RBP15.38■□□□□ 0.05
UPF3B-204ENST00000619445 MAP1SQ66K74 1059 aaPredicted RBP15.38■□□□□ 0.05
UPF3B-204ENST00000619445 CIAPIN1Q6FI81 312 aa15.38■□□□□ 0.05
UPF3B-204ENST00000619445 FAM89AQ96GI7 184 aa15.38■□□□□ 0.05
UPF3B-204ENST00000619445 GPRC5DQ9NZD1 345 aa15.38■□□□□ 0.05
UPF3B-204ENST00000619445 ATP5J2-PTCD1G3V325 749 aa15.37■□□□□ 0.05
UPF3B-204ENST00000619445 EPS15P42566 896 aa15.37■□□□□ 0.05
UPF3B-204ENST00000619445 CXCL9Q07325 125 aa15.37■□□□□ 0.05
UPF3B-204ENST00000619445 NCBP3Q53F19 620 aaKnown RBP15.37■□□□□ 0.05
UPF3B-204ENST00000619445 ZBTB38Q8NAP3 1195 aaPredicted RBP15.37■□□□□ 0.05
UPF3B-204ENST00000619445 CCDC191Q8NCU4 936 aa15.37■□□□□ 0.05
UPF3B-204ENST00000619445 EYA3Q99504 573 aa15.37■□□□□ 0.05
UPF3B-204ENST00000619445 TRPM7Q96QT4 1865 aa15.37■□□□□ 0.05
UPF3B-204ENST00000619445 RASSF10A6NK89 507 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 IRS4O14654 1257 aaPredicted RBP15.36■□□□□ 0.05
UPF3B-204ENST00000619445 CCDC27Q2M243 656 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 DEFB115Q30KQ5 88 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 COL13A1Q5TAT6 717 aaPredicted RBP15.36■□□□□ 0.05
UPF3B-204ENST00000619445 TNS4Q8IZW8 715 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 ZC3H15Q8WU90 426 aaKnown RBP15.36■□□□□ 0.05
UPF3B-204ENST00000619445 AIDAQ96BJ3 306 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 LTBP1Q14766 1721 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 WASHC4Q2M389 1173 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 BCL2L13Q9BXK5 485 aa15.36■□□□□ 0.05
UPF3B-204ENST00000619445 TAF1P21675 1872 aa15.35■□□□□ 0.05
UPF3B-204ENST00000619445 PCCAP05165 728 aaPredicted RBP15.35■□□□□ 0.05
UPF3B-204ENST00000619445 RPS8P62241 208 aaKnown RBP15.35■□□□□ 0.05
UPF3B-204ENST00000619445 CCDC152Q4G0S7 254 aa15.35■□□□□ 0.05
UPF3B-204ENST00000619445 STK31Q9BXU1 1019 aa15.35■□□□□ 0.05
UPF3B-204ENST00000619445 CWC25Q9NXE8 425 aaPredicted RBP15.35■□□□□ 0.05
UPF3B-204ENST00000619445 ABT1Q9ULW3 272 aaKnown RBP15.35■□□□□ 0.05
UPF3B-204ENST00000619445 NSFL1CQ9UNZ2 370 aaKnown RBP15.35■□□□□ 0.05
UPF3B-204ENST00000619445 H7C1D1 291 aa15.34■□□□□ 0.05
UPF3B-204ENST00000619445 ELL2O00472 640 aaPredicted RBP15.34■□□□□ 0.05
UPF3B-204ENST00000619445 ECE1P42892 770 aa15.34■□□□□ 0.05
UPF3B-204ENST00000619445 VEGFBP49765 207 aa15.34■□□□□ 0.05
UPF3B-204ENST00000619445 GMPSP49915 693 aaPredicted RBP15.34■□□□□ 0.05
UPF3B-204ENST00000619445 DPF2Q92785 391 aa15.34■□□□□ 0.05
UPF3B-204ENST00000619445 METTL22Q9BUU2 404 aaPredicted RBP15.34■□□□□ 0.05
UPF3B-204ENST00000619445 CACNA1FO60840 1977 aa15.33■□□□□ 0.04
UPF3B-204ENST00000619445 IL16Q14005 1332 aa15.33■□□□□ 0.04
UPF3B-204ENST00000619445 C6orf229H3BNL8 230 aa15.33■□□□□ 0.04
UPF3B-204ENST00000619445 PDE8AO60658 829 aa15.33■□□□□ 0.04
UPF3B-204ENST00000619445 RPS12P25398 132 aaKnown RBP15.33■□□□□ 0.04
UPF3B-204ENST00000619445 CTCFP49711 727 aaPredicted RBP15.33■□□□□ 0.04
UPF3B-204ENST00000619445 MAP2K1Q02750 393 aaPredicted RBP15.33■□□□□ 0.04
UPF3B-204ENST00000619445 NEXNQ0ZGT2 675 aa15.33■□□□□ 0.04
UPF3B-204ENST00000619445 CELF1Q92879 486 aaKnown RBP15.33■□□□□ 0.04
UPF3B-204ENST00000619445 PHAXQ9H814 394 aaKnown RBP15.33■□□□□ 0.04
UPF3B-204ENST00000619445 PRDM10Q9NQV6 1147 aa15.33■□□□□ 0.04
UPF3B-204ENST00000619445 PGAP2Q9UHJ9 254 aa15.33■□□□□ 0.04
UPF3B-204ENST00000619445 DUOX1Q9NRD9 1551 aa15.32■□□□□ 0.04
UPF3B-204ENST00000619445 RAD17O75943 681 aa15.32■□□□□ 0.04
UPF3B-204ENST00000619445 C8orf58Q8NAV2 365 aa15.32■□□□□ 0.04
UPF3B-204ENST00000619445 MYD88Q99836 296 aa15.32■□□□□ 0.04
UPF3B-204ENST00000619445 PODXL2Q9NZ53 605 aa15.32■□□□□ 0.04
UPF3B-204ENST00000619445 RTL5Q5HYW3 569 aaPredicted RBP15.31■□□□□ 0.04
UPF3B-204ENST00000619445 KSR2Q6VAB6 950 aa15.31■□□□□ 0.04
UPF3B-204ENST00000619445 SLC51AQ86UW1 340 aa15.31■□□□□ 0.04
UPF3B-204ENST00000619445 ZC3H12CQ9C0D7 883 aaKnown RBP15.31■□□□□ 0.04
UPF3B-204ENST00000619445 CNOT7Q9UIV1 285 aaKnown RBP15.31■□□□□ 0.04
UPF3B-204ENST00000619445 WDR33Q9C0J8 1336 aaKnown RBP15.3■□□□□ 0.04
UPF3B-204ENST00000619445 CDC37L1Q7L3B6 337 aa15.3■□□□□ 0.04
UPF3B-204ENST00000619445 WWC1Q8IX03 1113 aa15.3■□□□□ 0.04
UPF3B-204ENST00000619445 HHIPL1Q96JK4 782 aa15.3■□□□□ 0.04
UPF3B-204ENST00000619445 WBP1LQ9NX94 342 aa15.3■□□□□ 0.04
UPF3B-204ENST00000619445 ANKIB1Q9P2G1 1089 aa15.3■□□□□ 0.04
UPF3B-204ENST00000619445 YDJCA8MPS7 323 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 G3V3G9 751 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 GPSM2P81274 684 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 DCAF8Q5TAQ9 597 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 TBC1D16Q8TBP0 767 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 CDC5LQ99459 802 aaKnown RBP15.29■□□□□ 0.04
UPF3B-204ENST00000619445 BEGAINQ9BUH8 593 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 POLLQ9UGP5 575 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 GGA1Q9UJY5 639 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 MYH3P11055 1940 aa15.29■□□□□ 0.04
UPF3B-204ENST00000619445 FOXN1O15353 648 aa15.28■□□□□ 0.04
UPF3B-204ENST00000619445 ANP32CO43423 234 aa15.28■□□□□ 0.04
UPF3B-204ENST00000619445 ECE2O60344 883 aa15.28■□□□□ 0.04
UPF3B-204ENST00000619445 TWISTNBQ3B726 338 aaPredicted RBP15.28■□□□□ 0.04
UPF3B-204ENST00000619445 ANKRD18AQ8IVF6 992 aa15.28■□□□□ 0.04
UPF3B-204ENST00000619445 MICALL2Q8IY33 904 aa15.28■□□□□ 0.04
UPF3B-204ENST00000619445 MAP3K2Q9Y2U5 619 aa15.28■□□□□ 0.04
UPF3B-204ENST00000619445 TLL2Q9Y6L7 1015 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms