RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 UBLCP1Q8WVY7 318 aaPredicted RBP17.08■□□□□ 0.32
COL5A1-208ENST00000618395 RRAGDQ9NQL2 400 aaPredicted RBP17.08■□□□□ 0.32
COL5A1-208ENST00000618395 OAS2P29728 719 aaKnown RBP17.08■□□□□ 0.32
COL5A1-208ENST00000618395 CUX2O14529 1486 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 STX6O43752 255 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 VPS41P49754 854 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 IFT81Q8WYA0 676 aa17.08■□□□□ 0.32
COL5A1-208ENST00000618395 RIOK3O14730 519 aaKnown RBP17.07■□□□□ 0.32
COL5A1-208ENST00000618395 KRT83P78385 493 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 FAN1Q9Y2M0 1017 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 TUBB2AQ13885 445 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 CCDC144CPQ8IYA2 1237 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 C8orf76Q96K31 380 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 TUBB2BQ9BVA1 445 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 ODF2LQ9ULJ1 636 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 STAG1Q8WVM7 1258 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 TSGA10Q9BZW7 698 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 MTRF1LQ9UGC7 380 aaKnown RBP17.07■□□□□ 0.32
COL5A1-208ENST00000618395 FRMD3A2A2Y4 597 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 PUF60Q9UHX1 559 aaKnown RBP17.07■□□□□ 0.32
COL5A1-208ENST00000618395 BIN1O00499 593 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 SATB1Q01826 763 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 SDCCAG8Q86SQ7 713 aaPredicted RBP17.07■□□□□ 0.32
COL5A1-208ENST00000618395 Q9H521 79 aa17.07■□□□□ 0.32
COL5A1-208ENST00000618395 PYM1Q9BRP8 204 aaKnown RBP17.06■□□□□ 0.32
COL5A1-208ENST00000618395 SIL1Q9H173 461 aa17.06■□□□□ 0.32
COL5A1-208ENST00000618395 PPFIA1Q13136 1202 aa17.06■□□□□ 0.32
COL5A1-208ENST00000618395 TMED1Q13445 227 aa17.06■□□□□ 0.32
COL5A1-208ENST00000618395 SMARCC2Q8TAQ2 1214 aa17.06■□□□□ 0.32
COL5A1-208ENST00000618395 ZNF131P52739 623 aa17.06■□□□□ 0.32
COL5A1-208ENST00000618395 NAA16Q6N069 864 aaPredicted RBP17.06■□□□□ 0.32
COL5A1-208ENST00000618395 SMIM23A6NLE4 172 aa17.06■□□□□ 0.32
COL5A1-208ENST00000618395 AKR1B10O60218 316 aa17.06■□□□□ 0.32
COL5A1-208ENST00000618395 PRIM1P49642 420 aaKnown RBP17.06■□□□□ 0.32
COL5A1-208ENST00000618395 KRT13P13646 458 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 SYT10Q6XYQ8 523 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 N4BP2L2Q92802 583 aaPredicted RBP17.05■□□□□ 0.32
COL5A1-208ENST00000618395 GDPD2Q9HCC8 539 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 ABTB1Q969K4 478 aaPredicted RBP17.05■□□□□ 0.32
COL5A1-208ENST00000618395 SCAPERQ9BY12 1400 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 CCT4P50991 539 aaKnown RBP17.05■□□□□ 0.32
COL5A1-208ENST00000618395 CAPZA3Q96KX2 299 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 LIMCH1Q9UPQ0 1083 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 KANK4Q5T7N3 995 aaPredicted RBP17.05■□□□□ 0.32
COL5A1-208ENST00000618395 PHLDB3Q6NSJ2 640 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 RAB11FIP3O75154 756 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 ABCC8Q09428 1581 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 GOLGA6BA6NDN3 693 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 EFCAB13Q8IY85 973 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 TACO1Q9BSH4 297 aaKnown RBP17.05■□□□□ 0.32
COL5A1-208ENST00000618395 WASHC2AQ641Q2 1341 aa17.05■□□□□ 0.32
COL5A1-208ENST00000618395 ATF7IPQ6VMQ6 1270 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 TAOK1Q7L7X3 1001 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 TMEM57Q8N5G2 664 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 N4BP3O15049 544 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 SRGAP3O43295 1099 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 RPGRIP1LQ68CZ1 1315 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 JRKLQ9Y4A0 524 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 VPS52Q8N1B4 723 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 KIAA1524Q8TCG1 905 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 ADAMTS8Q9UP79 889 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 LCA5Q86VQ0 697 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 AKAP2Q9Y2D5 859 aa17.04■□□□□ 0.32
COL5A1-208ENST00000618395 U3KPZ7 1027 aaPredicted RBP17.04■□□□□ 0.32
COL5A1-208ENST00000618395 BCAR3O75815 825 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 RAB34Q9BZG1 259 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 CHMP4BP1P59074 171 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 SPAG5Q96R06 1193 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 PLEKHH2Q8IVE3 1493 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 ELF2Q15723 593 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 EIF2AQ9BY44 585 aaKnown RBP17.03■□□□□ 0.32
COL5A1-208ENST00000618395 PTGS1P23219 599 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 TTC39AQ5SRH9 613 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 ZSCAN25Q6NSZ9 544 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 MAP3K21Q5TCX8 1036 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 RUFY4Q6ZNE9 571 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 PPP1R9AQ9ULJ8 1098 aa17.03■□□□□ 0.32
COL5A1-208ENST00000618395 VSIG1Q86XK7 387 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 SYTL4Q96C24 671 aaPredicted RBP17.02■□□□□ 0.32
COL5A1-208ENST00000618395 HVCN1Q96D96 273 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 PALMDQ9NP74 551 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 WASHC2CQ9Y4E1 1318 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 DHX29Q7Z478 1369 aaKnown RBP17.02■□□□□ 0.32
COL5A1-208ENST00000618395 E7EVH7 732 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 TNNC1P63316 161 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 LMBR1Q8WVP7 490 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 ZBTB9Q96C00 473 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 PRDM2Q13029 1718 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 EFCAB2Q5VUJ9 269 aa17.02■□□□□ 0.32
COL5A1-208ENST00000618395 ATICP31939 592 aa17.02■□□□□ 0.31
COL5A1-208ENST00000618395 BCAP29Q9UHQ4 241 aa17.02■□□□□ 0.31
COL5A1-208ENST00000618395 STK38LQ9Y2H1 464 aa17.02■□□□□ 0.31
COL5A1-208ENST00000618395 PABPN1LA6NDY0 278 aaKnown RBP17.01■□□□□ 0.31
COL5A1-208ENST00000618395 SLC4A8Q2Y0W8 1093 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 ATP2A3Q93084 1043 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 SPECC1L-ADORA2AF8WAN1 911 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 TLDC2A0PJX2 215 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 ZNF569Q5MCW4 686 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 SSX2IPQ9Y2D8 614 aa17.01■□□□□ 0.31
COL5A1-208ENST00000618395 POLA1P09884 1462 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms