RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 CCDC194A0A1B0GVG4 234 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 PLBD2Q8NHP8 589 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 UBA5Q9GZZ9 404 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 KAT14Q9H8E8 782 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 MAGEC2Q9UBF1 373 aaPredicted RBP11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 CFAP45Q9UL16 551 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 TTC37Q6PGP7 1564 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 PHKG2P15735 406 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 IARSP41252 1262 aaKnown RBP11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 HDAC1Q13547 482 aaPredicted RBP11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 ODF2Q5BJF6 829 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 WASF1Q92558 559 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 PDCL3Q9H2J4 239 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 BMP2KQ9NSY1 1161 aaPredicted RBP11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 ZBTB40Q9NUA8 1239 aa11.84□□□□□ -0.51
SMARCA1-205ENST00000617310 SSFA2P28290 1259 aa11.83□□□□□ -0.51
SMARCA1-205ENST00000617310 EIF4A1P60842 406 aaKnown RBP11.83□□□□□ -0.51
SMARCA1-205ENST00000617310 NMIQ13287 307 aaPredicted RBP11.83□□□□□ -0.51
SMARCA1-205ENST00000617310 METTL22Q9BUU2 404 aaPredicted RBP11.83□□□□□ -0.51
SMARCA1-205ENST00000617310 CROCC2H7BZ55 1655 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 A0A1B0GUL7 405 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 WDHD1O75717 1129 aaPredicted RBP11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 RXRAP19793 462 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 ZNF804AQ7Z570 1209 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 NCOA7Q8NI08 942 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 LIG1P18858 919 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 SCLT1Q96NL6 688 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 ZNF408Q9H9D4 720 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 TSPY3P0CV98 308 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 TSPY8P0CW00 308 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 BAG6P46379 1132 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 ARHGEF25Q86VW2 580 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 TSPY26PQ9H489 355 aa11.83□□□□□ -0.52
SMARCA1-205ENST00000617310 PNMA6EA0A0J9YXQ4 647 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 MCM4P33991 863 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 MATR3P43243 847 aaKnown RBP eCLIP11.82□□□□□ -0.522e-7■■■□□ 19.2
SMARCA1-205ENST00000617310 METAP2P50579 478 aaKnown RBP eCLIP11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 FILIP1Q7Z7B0 1213 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 SUCLG2Q96I99 432 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 SOS1Q07889 1333 aaPredicted RBP11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 PRKG1Q13976 671 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 PAF1Q8N7H5 531 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 HDAC9Q9UKV0 1011 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 EIF2AK4Q9P2K8 1649 aaKnown RBP11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 NUP62CLQ9H1M0 184 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 DCTPP1Q9H773 170 aa11.82□□□□□ -0.52
SMARCA1-205ENST00000617310 EYA2O00167 538 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 HMGB1P09429 215 aaKnown RBP11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 CPA1P15085 419 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 WTAPQ15007 396 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 FILIP1LQ4L180 1135 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 PRAMEF22A3QJZ6 481 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 PRDM1O75626 825 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 CCDC192P0DO97 292 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 SSRP1Q08945 709 aaKnown RBP11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 MCMDC2Q4G0Z9 681 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 CCDC129Q6ZRS4 1044 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 ZKSCAN3Q9BRR0 538 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 EFCAB6Q5THR3 1501 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 GIGYF1O75420 1035 aaPredicted RBP11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 LDHBP07195 334 aaKnown RBP11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 WWC2Q6AWC2 1192 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 SAMD9LQ8IVG5 1584 aa11.81□□□□□ -0.52
SMARCA1-205ENST00000617310 ZBTB7BO15156 539 aaPredicted RBP11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 GJB2P29033 226 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 IDEP14735 1019 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 MCM5P33992 734 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 STIM1Q13586 685 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 GCKRQ14397 625 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 BRINP3Q76B58 766 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 CKAP2LQ8IYA6 745 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 FAM177A1Q8N128 213 aaPredicted RBP11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 EDC3Q96F86 508 aaKnown RBP11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 ESYT1Q9BSJ8 1104 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 SAP30BPQ9UHR5 308 aaKnown RBP11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 PLEKHG1Q9ULL1 1385 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 LOC102724428A0A0B4J2F2 783 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 MAGEB6P1A0A0J9YX57 407 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 SYCE3A1L190 88 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 SIK1P57059 783 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 CEP57L1Q8IYX8 460 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 LARGE2Q8N3Y3 721 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 CCDC191Q8NCU4 936 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 SH2B1Q9NRF2 756 aaPredicted RBP11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 MLH3Q9UHC1 1453 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 BIN1O00499 593 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 ZFYP08048 801 aaPredicted RBP11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 ZBTB1Q9Y2K1 713 aa11.8□□□□□ -0.52
SMARCA1-205ENST00000617310 MBD4O95243 580 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 EIF6P56537 245 aaKnown RBP11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 PROSER3Q2NL68 480 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 PARP10Q53GL7 1025 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 ISM2Q6H9L7 571 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 ESR2Q92731 530 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 CUL5Q93034 780 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 TRPC5Q9UL62 973 aaPredicted RBP11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 BCS1LQ9Y276 419 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 SAMM50Q9Y512 469 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 CDC42BPAQ5VT25 1732 aa11.79□□□□□ -0.52
SMARCA1-205ENST00000617310 GSTO1P78417 241 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms