RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 JAG2Q9Y219 1238 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 UQCRHLA0A096LP55 91 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 UQCRHP07919 91 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 USP5P45974 858 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 KLHL40Q2TBA0 621 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 CCAR1Q8IX12 1150 aaKnown RBP10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 SIRT2Q8IXJ6 389 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 EDC3Q96F86 508 aaKnown RBP10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 DDX21Q9NR30 783 aaKnown RBP eCLIP10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 IFIT3O14879 490 aaKnown RBP10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 RXRAP19793 462 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 NOC3LQ8WTT2 800 aaKnown RBP10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 CHAMP1Q96JM3 812 aa10.46□□□□□ -0.74
PDLIM5-222ENST00000615540 TIMM10P62072 90 aa10.46□□□□□ -0.74
PDLIM5-222ENST00000615540 TNNI3KQ59H18 835 aa10.46□□□□□ -0.74
PDLIM5-222ENST00000615540 FPGT-TNNI3KV9GXZ4 949 aa10.46□□□□□ -0.74
PDLIM5-222ENST00000615540 CDC42BPGQ6DT37 1551 aa10.46□□□□□ -0.74
PDLIM5-222ENST00000615540 BIN1O00499 593 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 HMGB1P09429 215 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 ZNF496Q96IT1 587 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 USP16Q9Y5T5 823 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 CD2BP2O95400 341 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 F13A1P00488 732 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 ZNF853P0CG23 659 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 SSRP1Q08945 709 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 USP44Q9H0E7 712 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 MPHOSPH10O00566 681 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 PRIM1P49642 420 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 TMEM67Q5HYA8 995 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 FAM177A1Q8N128 213 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 DBNDD2Q9BQY9 259 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 PHF23Q9BUL5 403 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 CTDP1Q9Y5B0 961 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 PREX1Q8TCU6 1659 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 ATP2B3Q16720 1220 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 ANKRD20A12PQ8NF67 263 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 TEX13AQ9BXU3 409 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 IRS4O14654 1257 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 IGSF1Q8N6C5 1336 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 CCDC47Q96A33 483 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 PALD1Q9ULE6 856 aa10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 NIP7Q9Y221 180 aaKnown RBP eCLIP10.45□□□□□ -0.74
PDLIM5-222ENST00000615540 NPHP4O75161 1426 aaPredicted RBP10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 KLF18A0A0U1RQI7 1052 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 SLC27A2O14975 620 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 FILIP1Q7Z7B0 1213 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 DZIP1Q86YF9 867 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 FSIP1Q8NA03 581 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 MIGA1Q8NAN2 632 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 HMG20BQ9P0W2 317 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 KDRP35968 1356 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 ADCY5O95622 1261 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 ANAPC15P60006 121 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 LRSAM1Q6UWE0 723 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 PLBD2Q8NHP8 589 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 TCEAL9Q9UHQ7 104 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 SETD1BQ9UPS6 1966 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 RNF113AO15541 343 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 PHKG2P15735 406 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 SLC26A6Q9BXS9 759 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 TMX1Q9H3N1 280 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 IL15P40933 162 aaPredicted RBP10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 METAP2P50579 478 aaKnown RBP eCLIP10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 PKP1Q13835 747 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 UNC5CLQ8IV45 518 aa10.44□□□□□ -0.74
PDLIM5-222ENST00000615540 KIF24Q5T7B8 1368 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 HCLS1P14317 486 aaPredicted RBP10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 BEND3Q5T5X7 828 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 SLC9C2Q5TAH2 1124 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 NCOA7Q8NI08 942 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 GIGYF1O75420 1035 aaPredicted RBP10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 MAGEB6Q8N7X4 407 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 SLC4A4Q9Y6R1 1079 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 PPLO60437 1756 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 NEURL1BA8MQ27 555 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 TTF1Q15361 905 aaPredicted RBP10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 JMYQ8N9B5 988 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 TLR7Q9NYK1 1049 aaKnown RBP10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 CCDC171Q6TFL3 1326 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 A0A0U1RQG5 324 aaPredicted RBP10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 KIAA1210Q9ULL0 1709 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 UBE2HP62256 183 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 GCKRQ14397 625 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 DDB1Q16531 1140 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 VSIG10Q8N0Z9 540 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 CDK5RAP3Q96JB5 506 aa10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 UTP14AQ9BVJ6 771 aaKnown RBP10.43□□□□□ -0.74
PDLIM5-222ENST00000615540 CCDC152Q4G0S7 254 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 ZSCAN30Q86W11 494 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 CPS1P31327 1500 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 NAP1L1P55209 391 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 PTH1RQ03431 593 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 SCAND2PQ9GZW5 306 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 ITGA6P23229 1130 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 RPGRQ92834 1020 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 IQSEC2Q5JU85 1478 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 IBTKQ9P2D0 1353 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 CEP57L1Q8IYX8 460 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 CCDC24Q8N4L8 307 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 ZKSCAN3Q9BRR0 538 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms