RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 GOLGA2Q08379 1002 aa24.23■■□□□ 1.47
PNKP-213ENST00000599543 FAM89AQ96GI7 184 aa24.23■■□□□ 1.47
PNKP-213ENST00000599543 RIC3Q7Z5B4 369 aa24.22■■□□□ 1.47
PNKP-213ENST00000599543 MPNDQ8N594 471 aa24.22■■□□□ 1.47
PNKP-213ENST00000599543 RTFDC1Q9BY42 306 aaPredicted RBP24.22■■□□□ 1.47
PNKP-213ENST00000599543 TMC4Q7Z404 712 aa24.21■■□□□ 1.47
PNKP-213ENST00000599543 MKRN1Q9UHC7 482 aaKnown RBP24.21■■□□□ 1.47
PNKP-213ENST00000599543 ITGBL1O95965 494 aaPredicted RBP24.2■■□□□ 1.46
PNKP-213ENST00000599543 SCNN1DP51172 638 aa24.2■■□□□ 1.46
PNKP-213ENST00000599543 MRS2Q9HD23 443 aa24.2■■□□□ 1.46
PNKP-213ENST00000599543 TRIM28Q13263 835 aaKnown RBP24.19■■□□□ 1.46
PNKP-213ENST00000599543 RTL5Q5HYW3 569 aaPredicted RBP24.19■■□□□ 1.46
PNKP-213ENST00000599543 MAP1SQ66K74 1059 aaPredicted RBP24.19■■□□□ 1.46
PNKP-213ENST00000599543 CNTROBQ8N137 903 aa24.19■■□□□ 1.46
PNKP-213ENST00000599543 CHMP4AQ9BY43 222 aa24.19■■□□□ 1.46
PNKP-213ENST00000599543 PHAXQ9H814 394 aaKnown RBP24.19■■□□□ 1.46
PNKP-213ENST00000599543 ZNRF3Q9ULT6 936 aa24.19■■□□□ 1.46
PNKP-213ENST00000599543 DUOX1Q9NRD9 1551 aa24.18■■□□□ 1.46
PNKP-213ENST00000599543 TMEM88BA6NKF7 163 aa24.18■■□□□ 1.46
PNKP-213ENST00000599543 C8orf58Q8NAV2 365 aa24.18■■□□□ 1.46
PNKP-213ENST00000599543 IRS4O14654 1257 aaPredicted RBP24.17■■□□□ 1.46
PNKP-213ENST00000599543 HSPA1AP0DMV8 641 aaKnown RBP24.17■■□□□ 1.46
PNKP-213ENST00000599543 HSPA1BP0DMV9 641 aaKnown RBP24.17■■□□□ 1.46
PNKP-213ENST00000599543 EPS15P42566 896 aa24.17■■□□□ 1.46
PNKP-213ENST00000599543 KIAA2012Q0VF49 1180 aa24.17■■□□□ 1.46
PNKP-213ENST00000599543 SF3B3Q15393 1217 aaKnown RBP24.17■■□□□ 1.46
PNKP-213ENST00000599543 CNTNAP1P78357 1384 aa24.16■■□□□ 1.46
PNKP-213ENST00000599543 CCDC30Q5VVM6 783 aa24.16■■□□□ 1.46
PNKP-213ENST00000599543 USP50Q70EL3 339 aaPredicted RBP24.15■■□□□ 1.46
PNKP-213ENST00000599543 ZBTB38Q8NAP3 1195 aaPredicted RBP24.15■■□□□ 1.46
PNKP-213ENST00000599543 CELF1Q92879 486 aaKnown RBP24.15■■□□□ 1.46
PNKP-213ENST00000599543 MYD88Q99836 296 aa24.15■■□□□ 1.46
PNKP-213ENST00000599543 DDX58O95786 925 aaKnown RBP24.14■■□□□ 1.45
PNKP-213ENST00000599543 HSP90B1P14625 803 aaKnown RBP24.14■■□□□ 1.45
PNKP-213ENST00000599543 CXCL9Q07325 125 aa24.14■■□□□ 1.45
PNKP-213ENST00000599543 GPRC5DQ9NZD1 345 aa24.14■■□□□ 1.45
PNKP-213ENST00000599543 COL13A1Q5TAT6 717 aaPredicted RBP24.13■■□□□ 1.45
PNKP-213ENST00000599543 CIAPIN1Q6FI81 312 aa24.13■■□□□ 1.45
PNKP-213ENST00000599543 COL4A1P02462 1669 aa24.13■■□□□ 1.45
PNKP-213ENST00000599543 TRPM7Q96QT4 1865 aa24.13■■□□□ 1.45
PNKP-213ENST00000599543 CCDC27Q2M243 656 aa24.12■■□□□ 1.45
PNKP-213ENST00000599543 CCDC191Q8NCU4 936 aa24.12■■□□□ 1.45
PNKP-213ENST00000599543 TSR2Q969E8 191 aaKnown RBP24.12■■□□□ 1.45
PNKP-213ENST00000599543 ADARB2Q9NS39 739 aaKnown RBP24.12■■□□□ 1.45
PNKP-213ENST00000599543 NSFL1CQ9UNZ2 370 aaKnown RBP24.12■■□□□ 1.45
PNKP-213ENST00000599543 RAD17O75943 681 aa24.11■■□□□ 1.45
PNKP-213ENST00000599543 GMPSP49915 693 aaPredicted RBP24.11■■□□□ 1.45
PNKP-213ENST00000599543 TNIP1Q15025 636 aa24.11■■□□□ 1.45
PNKP-213ENST00000599543 TSPYL6Q8N831 410 aa24.11■■□□□ 1.45
PNKP-213ENST00000599543 BCL2L13Q9BXK5 485 aa24.11■■□□□ 1.45
PNKP-213ENST00000599543 CWC25Q9NXE8 425 aaPredicted RBP24.11■■□□□ 1.45
PNKP-213ENST00000599543 CDHR2Q9BYE9 1310 aa24.1■■□□□ 1.45
PNKP-213ENST00000599543 WASHC4Q2M389 1173 aa24.1■■□□□ 1.45
PNKP-213ENST00000599543 WWC1Q8IX03 1113 aa24.1■■□□□ 1.45
PNKP-213ENST00000599543 METTL22Q9BUU2 404 aaPredicted RBP24.1■■□□□ 1.45
PNKP-213ENST00000599543 PCCAP05165 728 aaPredicted RBP24.09■■□□□ 1.45
PNKP-213ENST00000599543 RPS8P62241 208 aaKnown RBP24.09■■□□□ 1.45
PNKP-213ENST00000599543 DIEXFQ68CQ4 756 aaKnown RBP24.09■■□□□ 1.45
PNKP-213ENST00000599543 STK31Q9BXU1 1019 aa24.09■■□□□ 1.45
PNKP-213ENST00000599543 ABT1Q9ULW3 272 aaKnown RBP24.09■■□□□ 1.45
PNKP-213ENST00000599543 MYH3P11055 1940 aa24.09■■□□□ 1.45
PNKP-213ENST00000599543 C6orf229H3BNL8 230 aa24.08■■□□□ 1.45
PNKP-213ENST00000599543 MAP3K2Q9Y2U5 619 aa24.08■■□□□ 1.45
PNKP-213ENST00000599543 YDJCA8MPS7 323 aa24.07■■□□□ 1.44
PNKP-213ENST00000599543 VEGFBP49765 207 aa24.07■■□□□ 1.44
PNKP-213ENST00000599543 GPSM2P81274 684 aa24.07■■□□□ 1.44
PNKP-213ENST00000599543 CCDC152Q4G0S7 254 aa24.07■■□□□ 1.44
PNKP-213ENST00000599543 CACNA1FO60840 1977 aa24.06■■□□□ 1.44
PNKP-213ENST00000599543 RASSF10A6NK89 507 aa24.06■■□□□ 1.44
PNKP-213ENST00000599543 PDE8AO60658 829 aa24.06■■□□□ 1.44
PNKP-213ENST00000599543 KSR2Q6VAB6 950 aa24.06■■□□□ 1.44
PNKP-213ENST00000599543 EYA3Q99504 573 aa24.06■■□□□ 1.44
PNKP-213ENST00000599543 SEC31BQ9NQW1 1179 aa24.06■■□□□ 1.44
PNKP-213ENST00000599543 POLLQ9UGP5 575 aa24.06■■□□□ 1.44
PNKP-213ENST00000599543 RIMBP2O15034 1052 aa24.05■■□□□ 1.44
PNKP-213ENST00000599543 DEFB115Q30KQ5 88 aa24.05■■□□□ 1.44
PNKP-213ENST00000599543 TWISTNBQ3B726 338 aaPredicted RBP24.05■■□□□ 1.44
PNKP-213ENST00000599543 FAM9BQ8IZU0 186 aa24.05■■□□□ 1.44
PNKP-213ENST00000599543 DBNDD1Q9H9R9 158 aa24.05■■□□□ 1.44
PNKP-213ENST00000599543 IL16Q14005 1332 aa24.05■■□□□ 1.44
PNKP-213ENST00000599543 PI4KAP2A4QPH2 592 aa24.04■■□□□ 1.44
PNKP-213ENST00000599543 NEXNQ0ZGT2 675 aa24.04■■□□□ 1.44
PNKP-213ENST00000599543 TNS4Q8IZW8 715 aa24.04■■□□□ 1.44
PNKP-213ENST00000599543 PI4KAP1Q8N8J0 262 aa24.04■■□□□ 1.44
PNKP-213ENST00000599543 JARID2Q92833 1246 aaPredicted RBP24.04■■□□□ 1.44
PNKP-213ENST00000599543 SPEF2Q9C093 1822 aa24.03■■□□□ 1.44
PNKP-213ENST00000599543 TRAF5O00463 557 aa24.03■■□□□ 1.44
PNKP-213ENST00000599543 NCBP3Q53F19 620 aaKnown RBP24.03■■□□□ 1.44
PNKP-213ENST00000599543 TBC1D16Q8TBP0 767 aa24.03■■□□□ 1.44
PNKP-213ENST00000599543 CCDC85AQ96PX6 553 aaPredicted RBP24.03■■□□□ 1.44
PNKP-213ENST00000599543 ANKIB1Q9P2G1 1089 aa24.03■■□□□ 1.44
PNKP-213ENST00000599543 H7C1D1 291 aa24.02■■□□□ 1.44
PNKP-213ENST00000599543 FMR1Q06787 632 aaKnown RBP eCLIP24.02■■□□□ 1.44
PNKP-213ENST00000599543 AIDAQ96BJ3 306 aa24.02■■□□□ 1.44
PNKP-213ENST00000599543 CNOT7Q9UIV1 285 aaKnown RBP24.02■■□□□ 1.44
PNKP-213ENST00000599543 PSMD14O00487 310 aa24.01■■□□□ 1.43
PNKP-213ENST00000599543 ECE2O60344 883 aa24.01■■□□□ 1.43
PNKP-213ENST00000599543 MICALL2Q8IY33 904 aa24.01■■□□□ 1.43
PNKP-213ENST00000599543 PODXL2Q9NZ53 605 aa24.01■■□□□ 1.43
PNKP-213ENST00000599543 SCN9AQ15858 1988 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms