RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TNRC6CQ9HCJ0 1690 aaKnown RBP18.17■□□□□ 0.5
VRK3-212ENST00000596814 SERPINB2P05120 415 aa18.17■□□□□ 0.5
VRK3-212ENST00000596814 CCDC57Q2TAC2 916 aa18.17■□□□□ 0.5
VRK3-212ENST00000596814 HSP90AB4PQ58FF6 505 aa18.17■□□□□ 0.5
VRK3-212ENST00000596814 SLC10A5Q5PT55 438 aa18.17■□□□□ 0.5
VRK3-212ENST00000596814 MSL1Q68DK7 614 aa18.17■□□□□ 0.5
VRK3-212ENST00000596814 CCDC85AQ96PX6 553 aaPredicted RBP18.17■□□□□ 0.5
VRK3-212ENST00000596814 COPRSQ9NQ92 184 aa18.17■□□□□ 0.5
VRK3-212ENST00000596814 APBB1O00213 710 aa18.16■□□□□ 0.5
VRK3-212ENST00000596814 PTPN12Q05209 780 aaKnown RBP18.16■□□□□ 0.5
VRK3-212ENST00000596814 PRR5LQ6MZQ0 368 aa18.16■□□□□ 0.5
VRK3-212ENST00000596814 GREM2Q9H772 168 aa18.16■□□□□ 0.5
VRK3-212ENST00000596814 ZBTB47Q9UFB7 747 aaPredicted RBP18.16■□□□□ 0.5
VRK3-212ENST00000596814 RIC1Q4ADV7 1423 aa18.16■□□□□ 0.5
VRK3-212ENST00000596814 RAB11FIP3O75154 756 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 ST5P78524 1137 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 IFIT5Q13325 482 aaKnown RBP18.15■□□□□ 0.5
VRK3-212ENST00000596814 OS9Q13438 667 aaPredicted RBP18.15■□□□□ 0.5
VRK3-212ENST00000596814 CCDC152Q4G0S7 254 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 CHD1LQ86WJ1 897 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 KLHDC4Q8TBB5 520 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 RTL9Q8NET4 1388 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 MMP10P09238 476 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 ILDR2Q71H61 639 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 LRRCC1Q9C099 1032 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 LNPKQ9C0E8 428 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 SIL1Q9H173 461 aa18.15■□□□□ 0.5
VRK3-212ENST00000596814 LRP5O75197 1615 aa18.14■□□□□ 0.49
VRK3-212ENST00000596814 ANKRD18BA2A2Z9 1011 aa18.14■□□□□ 0.49
VRK3-212ENST00000596814 ITGA6P23229 1130 aa18.14■□□□□ 0.49
VRK3-212ENST00000596814 G3BP1Q13283 466 aaKnown RBP eCLIP18.14■□□□□ 0.49
VRK3-212ENST00000596814 TAF7LQ5H9L4 462 aa18.14■□□□□ 0.49
VRK3-212ENST00000596814 SKAP1Q86WV1 359 aa18.14■□□□□ 0.49
VRK3-212ENST00000596814 ERC1Q8IUD2 1116 aa18.14■□□□□ 0.49
VRK3-212ENST00000596814 CCDC24Q8N4L8 307 aa18.14■□□□□ 0.49
VRK3-212ENST00000596814 KIF1BPQ96EK5 621 aa18.13■□□□□ 0.49
VRK3-212ENST00000596814 NLRP3Q96P20 1036 aa18.13■□□□□ 0.49
VRK3-212ENST00000596814 PDGFDQ9GZP0 370 aaPredicted RBP18.13■□□□□ 0.49
VRK3-212ENST00000596814 PARP3Q9Y6F1 533 aa18.13■□□□□ 0.49
VRK3-212ENST00000596814 SF3B3Q15393 1217 aaKnown RBP18.12■□□□□ 0.49
VRK3-212ENST00000596814 C3orf67Q6ZVT6 689 aa18.12■□□□□ 0.49
VRK3-212ENST00000596814 SLC16A10Q8TF71 515 aa18.12■□□□□ 0.49
VRK3-212ENST00000596814 ZNF594Q96JF6 807 aaPredicted RBP18.12■□□□□ 0.49
VRK3-212ENST00000596814 SPEF2Q9C093 1822 aa18.12■□□□□ 0.49
VRK3-212ENST00000596814 SMARCA5O60264 1052 aaPredicted RBP18.12■□□□□ 0.49
VRK3-212ENST00000596814 RHPN1Q8TCX5 695 aa18.12■□□□□ 0.49
VRK3-212ENST00000596814 ANKRD31Q8N7Z5 1873 aa18.11■□□□□ 0.49
VRK3-212ENST00000596814 RGS3P49796 1198 aa18.11■□□□□ 0.49
VRK3-212ENST00000596814 PDE4AP27815 886 aa18.1■□□□□ 0.49
VRK3-212ENST00000596814 FBXO3Q9UK99 471 aa18.1■□□□□ 0.49
VRK3-212ENST00000596814 EYA2O00167 538 aa18.09■□□□□ 0.49
VRK3-212ENST00000596814 CIAO1O76071 339 aa18.09■□□□□ 0.49
VRK3-212ENST00000596814 BCL11AQ9H165 835 aa18.09■□□□□ 0.49
VRK3-212ENST00000596814 CDC5LQ99459 802 aaKnown RBP18.09■□□□□ 0.49
VRK3-212ENST00000596814 IL1RAPL2Q9NP60 686 aa18.09■□□□□ 0.49
VRK3-212ENST00000596814 SEC31BQ9NQW1 1179 aa18.09■□□□□ 0.49
VRK3-212ENST00000596814 SASH1O94885 1247 aa18.08■□□□□ 0.48
VRK3-212ENST00000596814 IL15P40933 162 aaPredicted RBP18.08■□□□□ 0.48
VRK3-212ENST00000596814 R3HDM1Q15032 1099 aaKnown RBP18.08■□□□□ 0.48
VRK3-212ENST00000596814 LRRC24Q50LG9 513 aa18.08■□□□□ 0.48
VRK3-212ENST00000596814 TAF1P21675 1872 aa18.08■□□□□ 0.48
VRK3-212ENST00000596814 COL4A1P02462 1669 aa18.08■□□□□ 0.48
VRK3-212ENST00000596814 ATG9AQ7Z3C6 839 aa18.07■□□□□ 0.48
VRK3-212ENST00000596814 PUS3Q9BZE2 481 aaKnown RBP18.07■□□□□ 0.48
VRK3-212ENST00000596814 IGHMBP2P38935 993 aaKnown RBP18.06■□□□□ 0.48
VRK3-212ENST00000596814 LDHAL6AQ6ZMR3 332 aa18.06■□□□□ 0.48
VRK3-212ENST00000596814 PELP1Q8IZL8 1130 aaKnown RBP18.06■□□□□ 0.48
VRK3-212ENST00000596814 CLASRPQ8N2M8 674 aaKnown RBP18.06■□□□□ 0.48
VRK3-212ENST00000596814 CNNM1Q9NRU3 951 aa18.06■□□□□ 0.48
VRK3-212ENST00000596814 CRY2Q49AN0 593 aa18.06■□□□□ 0.48
VRK3-212ENST00000596814 DDX46Q7L014 1031 aaKnown RBP18.06■□□□□ 0.48
VRK3-212ENST00000596814 MPHOSPH8Q99549 860 aa18.06■□□□□ 0.48
VRK3-212ENST00000596814 BRIP1Q9BX63 1249 aa18.06■□□□□ 0.48
VRK3-212ENST00000596814 COL11A2P13942 1736 aaPredicted RBP18.05■□□□□ 0.48
VRK3-212ENST00000596814 TFCP2Q12800 502 aa18.05■□□□□ 0.48
VRK3-212ENST00000596814 ANKRD18AQ8IVF6 992 aa18.05■□□□□ 0.48
VRK3-212ENST00000596814 C16orf71Q8IYS4 520 aaPredicted RBP18.05■□□□□ 0.48
VRK3-212ENST00000596814 RPGRQ92834 1020 aaKnown RBP18.05■□□□□ 0.48
VRK3-212ENST00000596814 ZBTB7AO95365 584 aa18.04■□□□□ 0.48
VRK3-212ENST00000596814 RIPOR2Q9Y4F9 1068 aa18.04■□□□□ 0.48
VRK3-212ENST00000596814 A0A1B0GUL6 1792 aa18.04■□□□□ 0.48
VRK3-212ENST00000596814 KLRG2A4D1S0 409 aaPredicted RBP18.03■□□□□ 0.48
VRK3-212ENST00000596814 OTUD7AQ8TE49 926 aaPredicted RBP18.03■□□□□ 0.48
VRK3-212ENST00000596814 MTFR1LQ9H019 292 aa18.03■□□□□ 0.48
VRK3-212ENST00000596814 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.03■□□□□ 0.48
VRK3-212ENST00000596814 ZNF609O15014 1411 aa18.03■□□□□ 0.48
VRK3-212ENST00000596814 PSDA5PKW4 1024 aaPredicted RBP18.03■□□□□ 0.48
VRK3-212ENST00000596814 PDE6BP35913 854 aa18.03■□□□□ 0.48
VRK3-212ENST00000596814 METTL24Q5JXM2 366 aa18.03■□□□□ 0.48
VRK3-212ENST00000596814 AACSQ86V21 672 aa18.03■□□□□ 0.48
VRK3-212ENST00000596814 PLEKHM2Q8IWE5 1019 aa18.03■□□□□ 0.48
VRK3-212ENST00000596814 CELF1Q92879 486 aaKnown RBP18.03■□□□□ 0.48
VRK3-212ENST00000596814 CEP126Q9P2H0 1117 aa18.03■□□□□ 0.48
VRK3-212ENST00000596814 MROH5Q6ZUA9 1318 aa18.02■□□□□ 0.48
VRK3-212ENST00000596814 SALL3Q9BXA9 1300 aa18.02■□□□□ 0.48
VRK3-212ENST00000596814 C10orf71Q711Q0 1435 aa18.02■□□□□ 0.48
VRK3-212ENST00000596814 GRAPQ13588 217 aa18.02■□□□□ 0.48
VRK3-212ENST00000596814 TNNI3KQ59H18 835 aa18.02■□□□□ 0.48
VRK3-212ENST00000596814 GRAPLQ8TC17 118 aaPredicted RBP18.02■□□□□ 0.48
VRK3-212ENST00000596814 RBM17Q96I25 401 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms