RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 LNPKQ9C0E8 428 aa18.27■□□□□ 0.52
SHKBP1-211ENST00000595945 RTL9Q8NET4 1388 aa18.27■□□□□ 0.51
SHKBP1-211ENST00000595945 SPEF2Q9C093 1822 aa18.26■□□□□ 0.51
SHKBP1-211ENST00000595945 TPTE2Q6XPS3 522 aa18.26■□□□□ 0.51
SHKBP1-211ENST00000595945 UPF1Q92900 1129 aaKnown RBP eCLIP18.26■□□□□ 0.51
SHKBP1-211ENST00000595945 LRRCC1Q9C099 1032 aa18.26■□□□□ 0.51
SHKBP1-211ENST00000595945 TAF1P21675 1872 aa18.26■□□□□ 0.51
SHKBP1-211ENST00000595945 ANKRD31Q8N7Z5 1873 aa18.26■□□□□ 0.51
SHKBP1-211ENST00000595945 SMARCA5O60264 1052 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-211ENST00000595945 DDR1Q08345 913 aa18.25■□□□□ 0.51
SHKBP1-211ENST00000595945 FAM161AQ3B820 660 aa18.25■□□□□ 0.51
SHKBP1-211ENST00000595945 NLGN1Q8N2Q7 840 aa18.25■□□□□ 0.51
SHKBP1-211ENST00000595945 KLHDC4Q8TBB5 520 aa18.25■□□□□ 0.51
SHKBP1-211ENST00000595945 KIF1BPQ96EK5 621 aa18.25■□□□□ 0.51
SHKBP1-211ENST00000595945 POLRMTO00411 1230 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 G3BP1Q13283 466 aaKnown RBP eCLIP18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 SF3B3Q15393 1217 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 ERC1Q8IUD2 1116 aa18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 RHPN1Q8TCX5 695 aa18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 GREM2Q9H772 168 aa18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 FBXO3Q9UK99 471 aa18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 CHMP3Q9Y3E7 222 aa18.24■□□□□ 0.51
SHKBP1-211ENST00000595945 A0A1B0GUL6 1792 aa18.23■□□□□ 0.51
SHKBP1-211ENST00000595945 APBB1O00213 710 aa18.23■□□□□ 0.51
SHKBP1-211ENST00000595945 SASH1O94885 1247 aa18.23■□□□□ 0.51
SHKBP1-211ENST00000595945 SERPINB2P05120 415 aa18.23■□□□□ 0.51
SHKBP1-211ENST00000595945 RGS3P49796 1198 aa18.23■□□□□ 0.51
SHKBP1-211ENST00000595945 SALL3Q9BXA9 1300 aa18.23■□□□□ 0.51
SHKBP1-211ENST00000595945 COL4A1P02462 1669 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 MSH5O43196 834 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 CIAO1O76071 339 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 ITGA6P23229 1130 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 IFIT5Q13325 482 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 CCDC57Q2TAC2 916 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 PRR5LQ6MZQ0 368 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 C3orf67Q6ZVT6 689 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 ATG9AQ7Z3C6 839 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 CNBD1Q8NA66 436 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 ZNF594Q96JF6 807 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 CCDC85AQ96PX6 553 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 SIL1Q9H173 461 aa18.22■□□□□ 0.51
SHKBP1-211ENST00000595945 ANKRD18BA2A2Z9 1011 aa18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 EYA2O00167 538 aa18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 GTF2E1P29083 439 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 OS9Q13438 667 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 CCDC152Q4G0S7 254 aa18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 C16orf71Q8IYS4 520 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 PELP1Q8IZL8 1130 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 ZBTB47Q9UFB7 747 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-211ENST00000595945 PLEKHM2Q8IWE5 1019 aa18.2■□□□□ 0.5
SHKBP1-211ENST00000595945 OTUD7AQ8TE49 926 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-211ENST00000595945 IL15P40933 162 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-211ENST00000595945 PUS3Q9BZE2 481 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-211ENST00000595945 IL1RAPL2Q9NP60 686 aa18.19■□□□□ 0.5
SHKBP1-211ENST00000595945 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-211ENST00000595945 LRRC24Q50LG9 513 aa18.18■□□□□ 0.5
SHKBP1-211ENST00000595945 CCDC24Q8N4L8 307 aa18.18■□□□□ 0.5
SHKBP1-211ENST00000595945 NLRP3Q96P20 1036 aa18.18■□□□□ 0.5
SHKBP1-211ENST00000595945 SEC31BQ9NQW1 1179 aa18.18■□□□□ 0.5
SHKBP1-211ENST00000595945 MMP10P09238 476 aa18.17■□□□□ 0.5
SHKBP1-211ENST00000595945 ST5P78524 1137 aa18.17■□□□□ 0.5
SHKBP1-211ENST00000595945 SLC16A10Q8TF71 515 aa18.17■□□□□ 0.5
SHKBP1-211ENST00000595945 OSBPL3Q9H4L5 887 aa18.17■□□□□ 0.5
SHKBP1-211ENST00000595945 GPR108Q9NPR9 543 aa18.17■□□□□ 0.5
SHKBP1-211ENST00000595945 STAP2Q9UGK3 403 aa18.17■□□□□ 0.5
SHKBP1-211ENST00000595945 RIPOR2Q9Y4F9 1068 aa18.17■□□□□ 0.5
SHKBP1-211ENST00000595945 ARAP2Q8WZ64 1704 aa18.16■□□□□ 0.5
SHKBP1-211ENST00000595945 KLRG2A4D1S0 409 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-211ENST00000595945 TFCP2Q12800 502 aa18.16■□□□□ 0.5
SHKBP1-211ENST00000595945 TAF7LQ5H9L4 462 aa18.16■□□□□ 0.5
SHKBP1-211ENST00000595945 MSL1Q68DK7 614 aa18.16■□□□□ 0.5
SHKBP1-211ENST00000595945 CLASRPQ8N2M8 674 aaKnown RBP18.16■□□□□ 0.5
SHKBP1-211ENST00000595945 COL11A2P13942 1736 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-211ENST00000595945 CRY2Q49AN0 593 aa18.15■□□□□ 0.5
SHKBP1-211ENST00000595945 EAF2Q96CJ1 260 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-211ENST00000595945 PDGFDQ9GZP0 370 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-211ENST00000595945 PARP3Q9Y6F1 533 aa18.15■□□□□ 0.5
SHKBP1-211ENST00000595945 AOX1Q06278 1338 aa18.15■□□□□ 0.5
SHKBP1-211ENST00000595945 AK9Q5TCS8 1911 aa18.15■□□□□ 0.5
SHKBP1-211ENST00000595945 NPHP1O15259 732 aa18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 MX1P20591 662 aa18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 PDE1AP54750 535 aa18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 TNNI3KQ59H18 835 aa18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 LDHAL6AQ6ZMR3 332 aa18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 CDC5LQ99459 802 aaKnown RBP18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 FPGT-TNNI3KV9GXZ4 949 aa18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 ZNF609O15014 1411 aa18.14■□□□□ 0.49
SHKBP1-211ENST00000595945 VGLL2Q8N8G2 317 aa18.13■□□□□ 0.49
SHKBP1-211ENST00000595945 BRIP1Q9BX63 1249 aa18.13■□□□□ 0.49
SHKBP1-211ENST00000595945 KIF13BQ9NQT8 1826 aa18.13■□□□□ 0.49
SHKBP1-211ENST00000595945 IGHMBP2P38935 993 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-211ENST00000595945 BMP2KLQ5H9B9 411 aa18.12■□□□□ 0.49
SHKBP1-211ENST00000595945 TTC22Q5TAA0 569 aa18.12■□□□□ 0.49
SHKBP1-211ENST00000595945 AACSQ86V21 672 aa18.12■□□□□ 0.49
SHKBP1-211ENST00000595945 CEP126Q9P2H0 1117 aa18.12■□□□□ 0.49
SHKBP1-211ENST00000595945 MROH5Q6ZUA9 1318 aa18.12■□□□□ 0.49
SHKBP1-211ENST00000595945 LRRC37AA6NMS7 1700 aa18.12■□□□□ 0.49
SHKBP1-211ENST00000595945 ANKRD18AQ8IVF6 992 aa18.11■□□□□ 0.49
SHKBP1-211ENST00000595945 CELF1Q92879 486 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-211ENST00000595945 CNNM1Q9NRU3 951 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms