RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	CTR9	Q6PD62	1173 aa		4.11	□□□□□ -1.75
VMP1-216	ENST00000592790	CCAR1	Q8IX12	1150 aa	Known RBP	4.11	□□□□□ -1.75
VMP1-216	ENST00000592790	MRPS27	Q92552	414 aa	Known RBP	4.11	□□□□□ -1.75
VMP1-216	ENST00000592790	MRFAP1L1	Q96HT8	127 aa		4.11	□□□□□ -1.75
VMP1-216	ENST00000592790	STK24	Q9Y6E0	443 aa		4.11	□□□□□ -1.75
VMP1-216	ENST00000592790	PXDNL	A1KZ92	1463 aa		4.11	□□□□□ -1.75
VMP1-216	ENST00000592790	CD2BP2	O95400	341 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	MAP4K4	O95819	1239 aa	Predicted RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	SLC3A2	P08195	630 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	CSB-PGBD3	P0DP91	1061 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	CDR1	P51861	262 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	NAA16	Q6N069	864 aa	Predicted RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	BRAP	Q7Z569	592 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	TRIM22	Q8IYM9	498 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	CCAR2	Q8N163	923 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	PHAX	Q9H814	394 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	AKAP2	Q9Y2D5	859 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	PLEKHG3	A1L390	1219 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	RIOK3	O14730	519 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	SEMA3E	O15041	775 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	ATP8B1	O43520	1251 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	IVL	P07476	585 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	ZFY	P08048	801 aa	Predicted RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	TOP1	P11387	765 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	CASQ1	P31415	396 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	CREB3L3	Q68CJ9	461 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	NFXL1	Q6ZNB6	911 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	FERMT3	Q86UX7	667 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	SIRT2	Q8IXJ6	389 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	CKAP2L	Q8IYA6	745 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	FSIP1	Q8NA03	581 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	BCL2L12	Q9HB09	334 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	TBC1D2B	Q9UPU7	963 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	SPG7	Q9UQ90	795 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	IFT172	Q9UG01	1749 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	RPS6KB1	P23443	525 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	FAM160A1	Q05DH4	1040 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	FAM69C	Q0P6D2	419 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	STK3	Q13188	491 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	KSR2	Q6VAB6	950 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	PDILT	Q8N807	584 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	LINS1	Q8NG48	757 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	TDRD7	Q8NHU6	1098 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	KIAA1524	Q8TCG1	905 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	C8orf76	Q96K31	380 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	RUFY1	Q96T51	708 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	ZSWIM6	Q9HCJ5	1215 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	A2ML1	A8K2U0	1454 aa		4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	ARHGEF28	Q8N1W1	1705 aa	Known RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	COL3A1	P02461	1466 aa	Predicted RBP	4.1	□□□□□ -1.75
VMP1-216	ENST00000592790	TNR	Q92752	1358 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	NUTM2F	A1L443	756 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	KIF5C	O60282	957 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	PTGS1	P23219	599 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	CFAP100	Q494V2	611 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	NUTM2G	Q5VZR2	741 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	NEUROD6	Q96NK8	337 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	PRDM10	Q9NQV6	1147 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	CCDC196	A0A1B0GTZ2	297 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	TXLNA	P40222	546 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	MTHFSD	Q2M296	383 aa	Known RBP	4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	WASHC4	Q2M389	1173 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	MCMDC2	Q4G0Z9	681 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	AKAP4	Q5JQC9	854 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	OTUD7A	Q8TE49	926 aa	Predicted RBP	4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	ZNF830	Q96NB3	372 aa	Predicted RBP	4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	CCDC69	A6NI79	296 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	GTPBP6	O43824	516 aa	Predicted RBP	4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	BMP15	O95972	392 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	TAT	P17735	454 aa	Predicted RBP	4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	CCDC148	Q8NFR7	591 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	CTAGE1	Q96RT6	745 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	CBX8	Q9HC52	389 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	ARFGAP3	Q9NP61	516 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	WDR70	Q9NW82	654 aa		4.09	□□□□□ -1.75
VMP1-216	ENST00000592790	ALK	Q9UM73	1620 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	CFAP65	Q6ZU64	1925 aa	Known RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	MROH2A	A6NES4	1674 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	PI4KAP2	A4QPH2	592 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	PSD	A5PKW4	1024 aa	Predicted RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	GRM8	O00222	908 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	GADD45B	O75293	160 aa	Predicted RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	GIGYF1	O75420	1035 aa	Predicted RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	STIM1	Q13586	685 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	SLFNL1	Q499Z3	407 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	TTC39A	Q5SRH9	613 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	FCHSD1	Q86WN1	690 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	MPND	Q8N594	471 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	CEP112	Q8N8E3	955 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	PI4KAP1	Q8N8J0	262 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	RASSF8	Q8NHQ8	419 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	LEO1	Q8WVC0	666 aa	Predicted RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	DNAJC25	Q9H1X3	360 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	LUC7L	Q9NQ29	371 aa	Known RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	ZNHIT6	Q9NWK9	470 aa	Known RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	MIS18A	Q9NYP9	233 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	ZHX1	Q9UKY1	873 aa	Predicted RBP	4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	MTMR6	Q9Y217	621 aa		4.09	□□□□□ -1.76
VMP1-216	ENST00000592790	RFX7	Q2KHR2	1363 aa		4.08	□□□□□ -1.76

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