RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	ATP6V0A2	Q9Y487	856 aa		11.72	□□□□□ -0.53
DNMT1-223	ENST00000591239	CCDC88A	Q3V6T2	1871 aa		11.72	□□□□□ -0.53
DNMT1-223	ENST00000591239	SNED1	Q8TER0	1413 aa		11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	PDE8A	O60658	829 aa		11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	GRAP	Q13588	217 aa		11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	GCKR	Q14397	625 aa		11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	GRAPL	Q8TC17	118 aa	Predicted RBP	11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	PSMD1	Q99460	953 aa		11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	TMX4	Q9H1E5	349 aa	Predicted RBP	11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.71	□□□□□ -0.53
DNMT1-223	ENST00000591239	KDM2B	Q8NHM5	1336 aa		11.7	□□□□□ -0.54
DNMT1-223	ENST00000591239	CDHR2	Q9BYE9	1310 aa		11.7	□□□□□ -0.54
DNMT1-223	ENST00000591239	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
DNMT1-223	ENST00000591239	SP8	Q8IXZ3	490 aa		11.7	□□□□□ -0.54
DNMT1-223	ENST00000591239	MRPL50	Q8N5N7	158 aa	Known RBP	11.7	□□□□□ -0.54
DNMT1-223	ENST00000591239	SSH1	Q8WYL5	1049 aa		11.7	□□□□□ -0.54
DNMT1-223	ENST00000591239	GLTPD2	A6NH11	291 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239		H7C1W4	665 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	CT47B1	P0C2W7	299 aa	Predicted RBP	11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	CCDC152	Q4G0S7	254 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	BEND3	Q5T5X7	828 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	DPY19L2	Q6NUT2	758 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	UBE3B	Q7Z3V4	1068 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	TMC4	Q7Z404	712 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	CELF1	Q92879	486 aa	Known RBP	11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	NMRK2	Q9NPI5	230 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	TAF1	P21675	1872 aa		11.69	□□□□□ -0.54
DNMT1-223	ENST00000591239	DICER1	Q9UPY3	1922 aa	Known RBP	11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	KIF3C	O14782	793 aa		11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	MYCN	P04198	464 aa	Predicted RBP	11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	IARS	P41252	1262 aa	Known RBP	11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	CTSW	P56202	376 aa		11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	RPS8	P62241	208 aa	Known RBP	11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	ALDH1L2	Q3SY69	923 aa		11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	SLC4A10	Q6U841	1118 aa		11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	BCL2L13	Q9BXK5	485 aa		11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	SEC31B	Q9NQW1	1179 aa		11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	TIAM2	Q8IVF5	1701 aa		11.68	□□□□□ -0.54
DNMT1-223	ENST00000591239	PTPRC	P08575	1304 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	CASP7	P55210	303 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	C1QTNF8	P60827	252 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	DPP8	Q6V1X1	898 aa	Predicted RBP	11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	MPND	Q8N594	471 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	TTLL11	Q8NHH1	800 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	RRAGC	Q9HB90	399 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	SMC4	Q9NTJ3	1288 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	CEP350	Q5VT06	3117 aa		11.67	□□□□□ -0.54
DNMT1-223	ENST00000591239	SUPT20H	Q8NEM7	779 aa		11.66	□□□□□ -0.54
DNMT1-223	ENST00000591239	JDP2	Q8WYK2	163 aa		11.66	□□□□□ -0.54
DNMT1-223	ENST00000591239	PLA2G12B	Q9BX93	195 aa		11.66	□□□□□ -0.54
DNMT1-223	ENST00000591239	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.66	□□□□□ -0.54
DNMT1-223	ENST00000591239	SRCIN1	Q9C0H9	1055 aa		11.66	□□□□□ -0.54
DNMT1-223	ENST00000591239	VPS33B	Q9H267	617 aa		11.66	□□□□□ -0.54
DNMT1-223	ENST00000591239	COL4A1	P02462	1669 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	FZD9	O00144	591 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	GRM8	O00222	908 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	ALDH1L1	O75891	902 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	DDN	O94850	711 aa	Predicted RBP	11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	VEGFA	P15692	232 aa	Predicted RBP	11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	AOC3	Q16853	763 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	ANKRD18A	Q8IVF6	992 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	LARGE2	Q8N3Y3	721 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	CDC5L	Q99459	802 aa	Known RBP	11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	GREM2	Q9H772	168 aa		11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.65	□□□□□ -0.54
DNMT1-223	ENST00000591239	PPIP5K2	O43314	1243 aa		11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	CSF1R	P07333	972 aa		11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	RARS	P54136	660 aa	Known RBP	11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	GPSM2	P81274	684 aa		11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	MYH3	P11055	1940 aa		11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	RTL9	Q8NET4	1388 aa		11.64	□□□□□ -0.55
DNMT1-223	ENST00000591239	LRRC37A	A6NMS7	1700 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	ZNF541	Q9H0D2	1346 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	COL4A5	P29400	1685 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	POTEC	B2RU33	542 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	TOMM70	O94826	608 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	ATXN8OS	P0DMR3	200 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	BRPF1	P55201	1214 aa	Predicted RBP	11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	FOXO4	P98177	505 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	NIM1K	Q8IY84	436 aa		11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	NOB1	Q9ULX3	412 aa	Known RBP	11.63	□□□□□ -0.55
DNMT1-223	ENST00000591239	ZBED9	Q6R2W3	1325 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	C6orf229	H3BNL8	230 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	ITGA6	P23229	1130 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	EIF6	P56537	245 aa	Known RBP	11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	KIAA2012	Q0VF49	1180 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	WASHC4	Q2M389	1173 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	FAM161A	Q3B820	660 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	BSDC1	Q9NW68	430 aa	Predicted RBP	11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	PODXL2	Q9NZ53	605 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	ANKIB1	Q9P2G1	1089 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	POLL	Q9UGP5	575 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	DUOX1	Q9NRD9	1551 aa		11.62	□□□□□ -0.55
DNMT1-223	ENST00000591239	UTY	O14607	1347 aa		11.61	□□□□□ -0.55
DNMT1-223	ENST00000591239	WDR90	Q96KV7	1748 aa		11.61	□□□□□ -0.55
DNMT1-223	ENST00000591239	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.61	□□□□□ -0.55
DNMT1-223	ENST00000591239	EPHA10	Q5JZY3	1008 aa		11.61	□□□□□ -0.55

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