RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CCDC152Q4G0S7 254 aa13.35□□□□□ -0.27
SS18-213ENST00000579640 MSL1Q68DK7 614 aa13.35□□□□□ -0.27
SS18-213ENST00000579640 SMC5Q8IY18 1101 aa13.35□□□□□ -0.27
SS18-213ENST00000579640 TTLL11Q8NHH1 800 aa13.35□□□□□ -0.27
SS18-213ENST00000579640 NLRP3Q96P20 1036 aa13.35□□□□□ -0.27
SS18-213ENST00000579640 CHMP3Q9Y3E7 222 aa13.35□□□□□ -0.27
SS18-213ENST00000579640 R3HDM1Q15032 1099 aaKnown RBP13.34□□□□□ -0.27
SS18-213ENST00000579640 SF3B3Q15393 1217 aaKnown RBP13.34□□□□□ -0.27
SS18-213ENST00000579640 CCDC57Q2TAC2 916 aa13.34□□□□□ -0.27
SS18-213ENST00000579640 HSP90AB4PQ58FF6 505 aa13.34□□□□□ -0.27
SS18-213ENST00000579640 COPRSQ9NQ92 184 aa13.34□□□□□ -0.27
SS18-213ENST00000579640 NOP58Q9Y2X3 529 aaKnown RBP13.34□□□□□ -0.27
SS18-213ENST00000579640 RFX5P48382 616 aaPredicted RBP13.33□□□□□ -0.28
SS18-213ENST00000579640 IFIT5Q13325 482 aaKnown RBP13.33□□□□□ -0.28
SS18-213ENST00000579640 PDGFDQ9GZP0 370 aaPredicted RBP13.33□□□□□ -0.28
SS18-213ENST00000579640 MTFR1LQ9H019 292 aa13.33□□□□□ -0.28
SS18-213ENST00000579640 ANKRD18BA2A2Z9 1011 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 RAB11FIP3O75154 756 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 FAM161AQ3B820 660 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 FBXO3Q9UK99 471 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 SURF6O75683 361 aaKnown RBP13.32□□□□□ -0.28
SS18-213ENST00000579640 ITGA6P23229 1130 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 ERC1Q8IUD2 1116 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 BRIP1Q9BX63 1249 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 GREM2Q9H772 168 aa13.32□□□□□ -0.28
SS18-213ENST00000579640 TNRC6CQ9HCJ0 1690 aaKnown RBP13.31□□□□□ -0.28
SS18-213ENST00000579640 PTPN12Q05209 780 aaKnown RBP13.31□□□□□ -0.28
SS18-213ENST00000579640 G3BP1Q13283 466 aaKnown RBP eCLIP13.31□□□□□ -0.28
SS18-213ENST00000579640 TAF7LQ5H9L4 462 aa13.31□□□□□ -0.28
SS18-213ENST00000579640 KLRG2A4D1S0 409 aaPredicted RBP13.3□□□□□ -0.28
SS18-213ENST00000579640 POLD1P28340 1107 aa13.3□□□□□ -0.28
SS18-213ENST00000579640 CCDC85AQ96PX6 553 aaPredicted RBP13.3□□□□□ -0.28
SS18-213ENST00000579640 CDC5LQ99459 802 aaKnown RBP13.3□□□□□ -0.28
SS18-213ENST00000579640 ZBTB47Q9UFB7 747 aaPredicted RBP13.3□□□□□ -0.28
SS18-213ENST00000579640 PDZRN3Q9UPQ7 1066 aa13.3□□□□□ -0.28
SS18-213ENST00000579640 EXOC6BQ9Y2D4 811 aa13.3□□□□□ -0.28
SS18-213ENST00000579640 CIAO1O76071 339 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 PDE6BP35913 854 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 OS9Q13438 667 aaPredicted RBP13.29□□□□□ -0.28
SS18-213ENST00000579640 CRY2Q49AN0 593 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 C3orf67Q6ZVT6 689 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 CCDC24Q8N4L8 307 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 PA2G4Q9UQ80 394 aaKnown RBP13.29□□□□□ -0.28
SS18-213ENST00000579640 PSDA5PKW4 1024 aaPredicted RBP13.29□□□□□ -0.28
SS18-213ENST00000579640 ZBTB7AO95365 584 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 NUCB1Q02818 461 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 DDX46Q7L014 1031 aaKnown RBP13.29□□□□□ -0.28
SS18-213ENST00000579640 KIF1BPQ96EK5 621 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 ANKRD31Q8N7Z5 1873 aa13.29□□□□□ -0.28
SS18-213ENST00000579640 LRP5O75197 1615 aa13.28□□□□□ -0.28
SS18-213ENST00000579640 EYA2O00167 538 aa13.28□□□□□ -0.28
SS18-213ENST00000579640 IGHMBP2P38935 993 aaKnown RBP13.28□□□□□ -0.28
SS18-213ENST00000579640 IL15P40933 162 aaPredicted RBP13.28□□□□□ -0.28
SS18-213ENST00000579640 ANKRD45Q5TZF3 282 aa13.28□□□□□ -0.28
SS18-213ENST00000579640 KLHDC4Q8TBB5 520 aa13.28□□□□□ -0.28
SS18-213ENST00000579640 RPGRQ92834 1020 aaKnown RBP13.28□□□□□ -0.28
SS18-213ENST00000579640 LRRCC1Q9C099 1032 aa13.28□□□□□ -0.28
SS18-213ENST00000579640 RBM17Q96I25 401 aaKnown RBP13.27□□□□□ -0.28
SS18-213ENST00000579640 SEC31BQ9NQW1 1179 aa13.27□□□□□ -0.28
SS18-213ENST00000579640 C10orf71Q711Q0 1435 aa13.27□□□□□ -0.29
SS18-213ENST00000579640 HOXA10P31260 410 aaPredicted RBP13.27□□□□□ -0.29
SS18-213ENST00000579640 LDHAL6AQ6ZMR3 332 aa13.27□□□□□ -0.29
SS18-213ENST00000579640 CHD1LQ86WJ1 897 aa13.27□□□□□ -0.29
SS18-213ENST00000579640 ANKRD18AQ8IVF6 992 aa13.27□□□□□ -0.29
SS18-213ENST00000579640 RHPN1Q8TCX5 695 aa13.27□□□□□ -0.29
SS18-213ENST00000579640 ZNF594Q96JF6 807 aaPredicted RBP13.27□□□□□ -0.29
SS18-213ENST00000579640 MPHOSPH8Q99549 860 aa13.27□□□□□ -0.29
SS18-213ENST00000579640 SIL1Q9H173 461 aa13.27□□□□□ -0.29
SS18-213ENST00000579640 CRAMP1Q96RY5 1269 aa13.26□□□□□ -0.29
SS18-213ENST00000579640 CNNM1Q9NRU3 951 aa13.26□□□□□ -0.29
SS18-213ENST00000579640 ATF5Q9Y2D1 282 aaPredicted RBP13.26□□□□□ -0.29
SS18-213ENST00000579640 APBB1O00213 710 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 NPR1P16066 1061 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 RPS8P62241 208 aaKnown RBP13.25□□□□□ -0.29
SS18-213ENST00000579640 GRAPQ13588 217 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 ATG9AQ7Z3C6 839 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 GRAPLQ8TC17 118 aaPredicted RBP13.25□□□□□ -0.29
SS18-213ENST00000579640 KIF13BQ9NQT8 1826 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 SASH1O94885 1247 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 SRGNP10124 158 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 LRRC24Q50LG9 513 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 MASTLQ96GX5 879 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 SGIP1Q9BQI5 828 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 BSDC1Q9NW68 430 aaPredicted RBP13.25□□□□□ -0.29
SS18-213ENST00000579640 RIPOR2Q9Y4F9 1068 aa13.25□□□□□ -0.29
SS18-213ENST00000579640 MROH5Q6ZUA9 1318 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 H0YIN7 160 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 ALDH1B1P30837 517 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 TMC4Q7Z404 712 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 C2CD5Q86YS7 1000 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 CLASRPQ8N2M8 674 aaKnown RBP13.24□□□□□ -0.29
SS18-213ENST00000579640 CELF1Q92879 486 aaKnown RBP13.24□□□□□ -0.29
SS18-213ENST00000579640 PUS3Q9BZE2 481 aaKnown RBP13.24□□□□□ -0.29
SS18-213ENST00000579640 LNPKQ9C0E8 428 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 GPR108Q9NPR9 543 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 CEP126Q9P2H0 1117 aa13.24□□□□□ -0.29
SS18-213ENST00000579640 BBOX1O75936 387 aa13.23□□□□□ -0.29
SS18-213ENST00000579640 STYK1Q6J9G0 422 aa13.23□□□□□ -0.29
SS18-213ENST00000579640 SPON1Q9HCB6 807 aa13.23□□□□□ -0.29
SS18-213ENST00000579640 SPEF2Q9C093 1822 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms