RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SF3B3Q15393 1217 aaKnown RBP16.47■□□□□ 0.23
CLK3-224ENST00000568605 CCDC152Q4G0S7 254 aa16.47■□□□□ 0.23
CLK3-224ENST00000568605 SLC4A10Q6U841 1118 aa16.47■□□□□ 0.23
CLK3-224ENST00000568605 UBE3BQ7Z3V4 1068 aa16.47■□□□□ 0.23
CLK3-224ENST00000568605 RNF181Q9P0P0 153 aa16.47■□□□□ 0.23
CLK3-224ENST00000568605 NFKBIEO00221 500 aa16.46■□□□□ 0.23
CLK3-224ENST00000568605 GRAPQ13588 217 aa16.46■□□□□ 0.23
CLK3-224ENST00000568605 C9orf131Q5VYM1 1079 aa16.46■□□□□ 0.23
CLK3-224ENST00000568605 GRAPLQ8TC17 118 aaPredicted RBP16.46■□□□□ 0.23
CLK3-224ENST00000568605 SRCIN1Q9C0H9 1055 aa16.46■□□□□ 0.23
CLK3-224ENST00000568605 SNED1Q8TER0 1413 aa16.45■□□□□ 0.22
CLK3-224ENST00000568605 SCN4AP35499 1836 aa16.45■□□□□ 0.22
CLK3-224ENST00000568605 PSME4Q14997 1843 aa16.45■□□□□ 0.22
CLK3-224ENST00000568605 ALDH1L1O75891 902 aa16.45■□□□□ 0.22
CLK3-224ENST00000568605 BBOX1O75936 387 aa16.45■□□□□ 0.22
CLK3-224ENST00000568605 FKBP4Q02790 459 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLK3-224ENST00000568605 BEND3Q5T5X7 828 aa16.45■□□□□ 0.22
CLK3-224ENST00000568605 COL4A1P02462 1669 aa16.44■□□□□ 0.22
CLK3-224ENST00000568605 RTL9Q8NET4 1388 aa16.44■□□□□ 0.22
CLK3-224ENST00000568605 BRPF1P55201 1214 aaPredicted RBP16.44■□□□□ 0.22
CLK3-224ENST00000568605 CTSWP56202 376 aa16.44■□□□□ 0.22
CLK3-224ENST00000568605 C7orf43Q8WVR3 580 aa16.44■□□□□ 0.22
CLK3-224ENST00000568605 ATP6V0A2Q9Y487 856 aa16.44■□□□□ 0.22
CLK3-224ENST00000568605 DUOX1Q9NRD9 1551 aa16.43■□□□□ 0.22
CLK3-224ENST00000568605 WDR90Q96KV7 1748 aa16.43■□□□□ 0.22
CLK3-224ENST00000568605 H7C1W4 665 aa16.43■□□□□ 0.22
CLK3-224ENST00000568605 RARSP54136 660 aaKnown RBP16.43■□□□□ 0.22
CLK3-224ENST00000568605 ZNF784Q8NCA9 323 aaPredicted RBP16.43■□□□□ 0.22
CLK3-224ENST00000568605 PSMD1Q99460 953 aa16.43■□□□□ 0.22
CLK3-224ENST00000568605 API5Q9BZZ5 524 aaKnown RBP16.43■□□□□ 0.22
CLK3-224ENST00000568605 C9orf78Q9NZ63 289 aaPredicted RBP16.43■□□□□ 0.22
CLK3-224ENST00000568605 GRM8O00222 908 aa16.42■□□□□ 0.22
CLK3-224ENST00000568605 CDC5LQ99459 802 aaKnown RBP16.42■□□□□ 0.22
CLK3-224ENST00000568605 PLA2G12BQ9BX93 195 aa16.42■□□□□ 0.22
CLK3-224ENST00000568605 SP8Q8IXZ3 490 aa16.41■□□□□ 0.22
CLK3-224ENST00000568605 SUPT20HQ8NEM7 779 aa16.41■□□□□ 0.22
CLK3-224ENST00000568605 JARID2Q92833 1246 aaPredicted RBP16.41■□□□□ 0.22
CLK3-224ENST00000568605 GPBP1L1Q9HC44 474 aaPredicted RBP16.41■□□□□ 0.22
CLK3-224ENST00000568605 KDM2BQ8NHM5 1336 aa16.41■□□□□ 0.22
CLK3-224ENST00000568605 MYH13Q9UKX3 1938 aa16.41■□□□□ 0.22
CLK3-224ENST00000568605 IPO8O15397 1037 aaKnown RBP16.4■□□□□ 0.22
CLK3-224ENST00000568605 IARSP41252 1262 aaKnown RBP16.39■□□□□ 0.21
CLK3-224ENST00000568605 CCT4P50991 539 aaKnown RBP16.39■□□□□ 0.21
CLK3-224ENST00000568605 CASP7P55210 303 aa16.39■□□□□ 0.21
CLK3-224ENST00000568605 OLFM4Q6UX06 510 aa16.39■□□□□ 0.21
CLK3-224ENST00000568605 DPP8Q6V1X1 898 aaPredicted RBP16.39■□□□□ 0.21
CLK3-224ENST00000568605 ANKRD18AQ8IVF6 992 aa16.39■□□□□ 0.21
CLK3-224ENST00000568605 TTLL11Q8NHH1 800 aa16.39■□□□□ 0.21
CLK3-224ENST00000568605 ARHGAP45Q92619 1136 aa16.39■□□□□ 0.21
CLK3-224ENST00000568605 CELF1Q92879 486 aaKnown RBP16.39■□□□□ 0.21
CLK3-224ENST00000568605 NOB1Q9ULX3 412 aaKnown RBP16.39■□□□□ 0.21
CLK3-224ENST00000568605 RPS8P62241 208 aaKnown RBP16.38■□□□□ 0.21
CLK3-224ENST00000568605 MPNDQ8N594 471 aa16.38■□□□□ 0.21
CLK3-224ENST00000568605 CCDC85AQ96PX6 553 aaPredicted RBP16.38■□□□□ 0.21
CLK3-224ENST00000568605 ZNF526Q8TF50 670 aaPredicted RBP16.37■□□□□ 0.21
CLK3-224ENST00000568605 JDP2Q8WYK2 163 aa16.37■□□□□ 0.21
CLK3-224ENST00000568605 VPS33BQ9H267 617 aa16.37■□□□□ 0.21
CLK3-224ENST00000568605 GREM2Q9H772 168 aa16.37■□□□□ 0.21
CLK3-224ENST00000568605 ZNF277Q9NRM2 450 aaPredicted RBP16.37■□□□□ 0.21
CLK3-224ENST00000568605 CHMP3Q9Y3E7 222 aa16.37■□□□□ 0.21
CLK3-224ENST00000568605 IGHMBP2P38935 993 aaKnown RBP16.36■□□□□ 0.21
CLK3-224ENST00000568605 PRELPP51888 382 aa16.36■□□□□ 0.21
CLK3-224ENST00000568605 FAM161AQ3B820 660 aa16.36■□□□□ 0.21
CLK3-224ENST00000568605 DPY19L2Q6NUT2 758 aa16.36■□□□□ 0.21
CLK3-224ENST00000568605 SEC31BQ9NQW1 1179 aa16.36■□□□□ 0.21
CLK3-224ENST00000568605 HDAC5Q9UQL6 1122 aa16.36■□□□□ 0.21
CLK3-224ENST00000568605 UTYO14607 1347 aa16.36■□□□□ 0.21
CLK3-224ENST00000568605 ANKRD18BA2A2Z9 1011 aa16.35■□□□□ 0.21
CLK3-224ENST00000568605 PPIP5K2O43314 1243 aa16.35■□□□□ 0.21
CLK3-224ENST00000568605 ITGA6P23229 1130 aa16.35■□□□□ 0.21
CLK3-224ENST00000568605 ATF7IPQ6VMQ6 1270 aa16.35■□□□□ 0.21
CLK3-224ENST00000568605 LARGE2Q8N3Y3 721 aa16.35■□□□□ 0.21
CLK3-224ENST00000568605 FRAT1Q92837 279 aaPredicted RBP16.35■□□□□ 0.21
CLK3-224ENST00000568605 RTFDC1Q9BY42 306 aaPredicted RBP16.35■□□□□ 0.21
CLK3-224ENST00000568605 NSFL1CQ9UNZ2 370 aaKnown RBP16.35■□□□□ 0.21
CLK3-224ENST00000568605 COL4A5P29400 1685 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 CSF1RP07333 972 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 IFIT5Q13325 482 aaKnown RBP16.34■□□□□ 0.21
CLK3-224ENST00000568605 ZKSCAN2Q63HK3 967 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 NIM1KQ8IY84 436 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 EYA3Q99504 573 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 MPHOSPH8Q99549 860 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 SCN9AQ15858 1988 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 XDHP47989 1333 aa16.34■□□□□ 0.21
CLK3-224ENST00000568605 GLTPD2A6NH11 291 aa16.33■□□□□ 0.2
CLK3-224ENST00000568605 BCAR3O75815 825 aa16.33■□□□□ 0.2
CLK3-224ENST00000568605 NBPF7P0C2Y1 421 aaPredicted RBP16.33■□□□□ 0.2
CLK3-224ENST00000568605 CCDC57Q2TAC2 916 aa16.33■□□□□ 0.2
CLK3-224ENST00000568605 TAF7LQ5H9L4 462 aa16.33■□□□□ 0.2
CLK3-224ENST00000568605 BSDC1Q9NW68 430 aaPredicted RBP16.33■□□□□ 0.2
CLK3-224ENST00000568605 ANKIB1Q9P2G1 1089 aa16.33■□□□□ 0.2
CLK3-224ENST00000568605 ZNF646O15015 1829 aaPredicted RBP16.33■□□□□ 0.2
CLK3-224ENST00000568605 C6orf229H3BNL8 230 aa16.32■□□□□ 0.2
CLK3-224ENST00000568605 UBTFL1P0CB47 393 aaPredicted RBP16.32■□□□□ 0.2
CLK3-224ENST00000568605 TRIM27P14373 513 aa16.32■□□□□ 0.2
CLK3-224ENST00000568605 EIF6P56537 245 aaKnown RBP16.32■□□□□ 0.2
CLK3-224ENST00000568605 FOXO4P98177 505 aa16.32■□□□□ 0.2
CLK3-224ENST00000568605 LMBR1LQ6UX01 489 aa16.32■□□□□ 0.2
CLK3-224ENST00000568605 FTSJ3Q8IY81 847 aaKnown RBP16.32■□□□□ 0.2
CLK3-224ENST00000568605 ARAP2Q8WZ64 1704 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms