RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RTFDC1Q9BY42 306 aaPredicted RBP21.55■■□□□ 1.04
CLK3-223ENST00000568488 RNF186Q9NXI6 227 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 SAGE1Q9NXZ1 904 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 NUP98P52948 1817 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 IBTKQ9P2D0 1353 aaPredicted RBP21.54■■□□□ 1.04
CLK3-223ENST00000568488 U2AF1L5P0DN76 240 aaPredicted RBP21.54■■□□□ 1.04
CLK3-223ENST00000568488 ZNF157P51786 506 aaPredicted RBP21.54■■□□□ 1.04
CLK3-223ENST00000568488 U2AF1Q01081 240 aaKnown RBP eCLIP21.54■■□□□ 1.04
CLK3-223ENST00000568488 MICALL2Q8IY33 904 aa21.54■■□□□ 1.04
CLK3-223ENST00000568488 ZNF34Q8IZ26 560 aa21.54■■□□□ 1.04
CLK3-223ENST00000568488 CCDC102AQ96A19 550 aa21.54■■□□□ 1.04
CLK3-223ENST00000568488 NUDCQ9Y266 331 aa21.54■■□□□ 1.04
CLK3-223ENST00000568488 ABCC4O15439 1325 aa21.54■■□□□ 1.04
CLK3-223ENST00000568488 FAM155AB1AL88 458 aaPredicted RBP21.53■■□□□ 1.04
CLK3-223ENST00000568488 KIAA2012Q0VF49 1180 aa21.53■■□□□ 1.04
CLK3-223ENST00000568488 GBA2Q9HCG7 927 aaPredicted RBP21.53■■□□□ 1.04
CLK3-223ENST00000568488 CLSPNQ9HAW4 1339 aa21.53■■□□□ 1.04
CLK3-223ENST00000568488 SAMD7Q7Z3H4 446 aa21.52■■□□□ 1.04
CLK3-223ENST00000568488 KRT26Q7Z3Y9 468 aa21.52■■□□□ 1.04
CLK3-223ENST00000568488 SP8Q8IXZ3 490 aa21.52■■□□□ 1.04
CLK3-223ENST00000568488 ZBTB12Q9Y330 459 aaPredicted RBP21.52■■□□□ 1.04
CLK3-223ENST00000568488 HTATSF1O43719 755 aaKnown RBP21.51■■□□□ 1.03
CLK3-223ENST00000568488 BBOX1O75936 387 aa21.51■■□□□ 1.03
CLK3-223ENST00000568488 CTU1Q7Z7A3 348 aaKnown RBP21.51■■□□□ 1.03
CLK3-223ENST00000568488 TBC1D10BQ4KMP7 808 aaPredicted RBP21.5■■□□□ 1.03
CLK3-223ENST00000568488 RBM26Q5T8P6 1007 aaKnown RBP21.5■■□□□ 1.03
CLK3-223ENST00000568488 GIGYF2Q6Y7W6 1299 aaKnown RBP21.5■■□□□ 1.03
CLK3-223ENST00000568488 UTP14AQ9BVJ6 771 aaKnown RBP21.5■■□□□ 1.03
CLK3-223ENST00000568488 YDJCA8MPS7 323 aa21.49■■□□□ 1.03
CLK3-223ENST00000568488 PARP10Q53GL7 1025 aa21.49■■□□□ 1.03
CLK3-223ENST00000568488 DCPSQ96C86 337 aaKnown RBP21.49■■□□□ 1.03
CLK3-223ENST00000568488 ADM5C9JUS6 153 aa21.48■■□□□ 1.03
CLK3-223ENST00000568488 SLC10A5Q5PT55 438 aa21.48■■□□□ 1.03
CLK3-223ENST00000568488 CSRNP1Q96S65 589 aa21.48■■□□□ 1.03
CLK3-223ENST00000568488 PNISRQ8TF01 805 aaKnown RBP21.47■■□□□ 1.03
CLK3-223ENST00000568488 LAMB4A4D0S4 1761 aa21.46■■□□□ 1.03
CLK3-223ENST00000568488 PSMD14O00487 310 aa21.46■■□□□ 1.03
CLK3-223ENST00000568488 HCLS1P14317 486 aaPredicted RBP21.46■■□□□ 1.03
CLK3-223ENST00000568488 EIF4A1P60842 406 aaKnown RBP21.46■■□□□ 1.03
CLK3-223ENST00000568488 DDX46Q7L014 1031 aaKnown RBP21.46■■□□□ 1.03
CLK3-223ENST00000568488 DPF2Q92785 391 aa21.46■■□□□ 1.03
CLK3-223ENST00000568488 HPS5Q9UPZ3 1129 aa21.46■■□□□ 1.03
CLK3-223ENST00000568488 EGFRP00533 1210 aa21.45■■□□□ 1.02
CLK3-223ENST00000568488 THUMPD2Q9BTF0 503 aaKnown RBP21.45■■□□□ 1.02
CLK3-223ENST00000568488 SLC10A3P09131 477 aa21.44■■□□□ 1.02
CLK3-223ENST00000568488 RIMBP2O15034 1052 aa21.43■■□□□ 1.02
CLK3-223ENST00000568488 GRAPQ13588 217 aa21.43■■□□□ 1.02
CLK3-223ENST00000568488 WASHC4Q2M389 1173 aa21.43■■□□□ 1.02
CLK3-223ENST00000568488 GRAPLQ8TC17 118 aaPredicted RBP21.43■■□□□ 1.02
CLK3-223ENST00000568488 DBNDD1Q9H9R9 158 aa21.43■■□□□ 1.02
CLK3-223ENST00000568488 HDAC9Q9UKV0 1011 aa21.43■■□□□ 1.02
CLK3-223ENST00000568488 AKAP11Q9UKA4 1901 aa21.43■■□□□ 1.02
CLK3-223ENST00000568488 SULF1Q8IWU6 871 aa21.42■■□□□ 1.02
CLK3-223ENST00000568488 POLR2AP24928 1970 aaKnown RBP21.41■■□□□ 1.02
CLK3-223ENST00000568488 NEFMP07197 916 aa21.4■■□□□ 1.02
CLK3-223ENST00000568488 EIF2S2P20042 333 aaKnown RBP21.4■■□□□ 1.02
CLK3-223ENST00000568488 TRMT112Q9UI30 125 aaKnown RBP21.4■■□□□ 1.02
CLK3-223ENST00000568488 NSFL1CQ9UNZ2 370 aaKnown RBP21.4■■□□□ 1.02
CLK3-223ENST00000568488 C6orf229H3BNL8 230 aa21.39■■□□□ 1.01
CLK3-223ENST00000568488 RPS12P25398 132 aaKnown RBP21.39■■□□□ 1.01
CLK3-223ENST00000568488 PKN2Q16513 984 aaKnown RBP21.39■■□□□ 1.01
CLK3-223ENST00000568488 DOK7Q18PE1 504 aa21.39■■□□□ 1.01
CLK3-223ENST00000568488 REM2Q8IYK8 340 aaPredicted RBP21.39■■□□□ 1.01
CLK3-223ENST00000568488 KCNQ5Q9NR82 932 aa21.39■■□□□ 1.01
CLK3-223ENST00000568488 ERBB4Q15303 1308 aa21.38■■□□□ 1.01
CLK3-223ENST00000568488 ANXA1P04083 346 aa21.38■■□□□ 1.01
CLK3-223ENST00000568488 KIF4BQ2VIQ3 1234 aa21.38■■□□□ 1.01
CLK3-223ENST00000568488 ZNF428Q96B54 188 aa21.38■■□□□ 1.01
CLK3-223ENST00000568488 CDCA5Q96FF9 252 aa21.38■■□□□ 1.01
CLK3-223ENST00000568488 GGA3Q9NZ52 723 aa21.38■■□□□ 1.01
CLK3-223ENST00000568488 TBC1D8O95759 1140 aa21.37■■□□□ 1.01
CLK3-223ENST00000568488 TMC4Q7Z404 712 aa21.37■■□□□ 1.01
CLK3-223ENST00000568488 NLRP10Q86W26 655 aa21.37■■□□□ 1.01
CLK3-223ENST00000568488 RASAL3Q86YV0 1011 aa21.37■■□□□ 1.01
CLK3-223ENST00000568488 GCC1Q96CN9 775 aa21.37■■□□□ 1.01
CLK3-223ENST00000568488 ASTN2O75129 1339 aaPredicted RBP21.36■■□□□ 1.01
CLK3-223ENST00000568488 ECE2O60344 883 aa21.36■■□□□ 1.01
CLK3-223ENST00000568488 AIMP1Q12904 312 aaKnown RBP21.36■■□□□ 1.01
CLK3-223ENST00000568488 HSP90AB3PQ58FF7 597 aa21.36■■□□□ 1.01
CLK3-223ENST00000568488 ZNF296Q8WUU4 475 aaPredicted RBP21.36■■□□□ 1.01
CLK3-223ENST00000568488 SH3TC1Q8TE82 1336 aa21.35■■□□□ 1.01
CLK3-223ENST00000568488 PPP2R1AP30153 589 aa21.35■■□□□ 1.01
CLK3-223ENST00000568488 KDM3BQ7LBC6 1761 aa21.34■■□□□ 1.01
CLK3-223ENST00000568488 PDIA6Q15084 440 aa21.34■■□□□ 1.01
CLK3-223ENST00000568488 PROSER3Q2NL68 480 aa21.34■■□□□ 1.01
CLK3-223ENST00000568488 LRP10Q7Z4F1 713 aa21.34■■□□□ 1.01
CLK3-223ENST00000568488 POLLQ9UGP5 575 aa21.34■■□□□ 1.01
CLK3-223ENST00000568488 TAF1P21675 1872 aa21.34■■□□□ 1.01
CLK3-223ENST00000568488 LAMB2P55268 1798 aa21.33■■□□□ 1.01
CLK3-223ENST00000568488 DUOX1Q9NRD9 1551 aa21.33■■□□□ 1.01
CLK3-223ENST00000568488 GPSM2P81274 684 aa21.33■■□□□ 1.01
CLK3-223ENST00000568488 ANGEL2Q5VTE6 544 aaKnown RBP21.33■■□□□ 1.01
CLK3-223ENST00000568488 COPS6Q7L5N1 327 aa21.33■■□□□ 1.01
CLK3-223ENST00000568488 EYA3Q99504 573 aa21.33■■□□□ 1.01
CLK3-223ENST00000568488 RTL9Q8NET4 1388 aa21.33■■□□□ 1
CLK3-223ENST00000568488 G3V3G9 751 aa21.32■■□□□ 1
CLK3-223ENST00000568488 TCIRG1Q13488 830 aa21.32■■□□□ 1
CLK3-223ENST00000568488 SCARF1Q14162 830 aa21.32■■□□□ 1
CLK3-223ENST00000568488 DCAF8Q5TAQ9 597 aa21.32■■□□□ 1
CLK3-223ENST00000568488 NECTIN2Q92692 538 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms