RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SGSM2O43147 1006 aa15.87■□□□□ 0.13
VPS4A-204ENST00000566354 FAM184AQ8NB25 1140 aa15.87■□□□□ 0.13
VPS4A-204ENST00000566354 TMEM87AQ8NBN3 555 aa15.87■□□□□ 0.13
VPS4A-204ENST00000566354 PI4K2BQ8TCG2 481 aa15.87■□□□□ 0.13
VPS4A-204ENST00000566354 DNAAF4Q8WXU2 420 aa15.87■□□□□ 0.13
VPS4A-204ENST00000566354 KIF1BPQ96EK5 621 aa15.87■□□□□ 0.13
VPS4A-204ENST00000566354 R3HCC1Q9Y3T6 440 aaKnown RBP15.87■□□□□ 0.13
VPS4A-204ENST00000566354 MAP3K2Q9Y2U5 619 aa15.86■□□□□ 0.13
VPS4A-204ENST00000566354 PALLDQ8WX93 1383 aa15.86■□□□□ 0.13
VPS4A-204ENST00000566354 KSR2Q6VAB6 950 aa15.86■□□□□ 0.13
VPS4A-204ENST00000566354 CNTROBQ8N137 903 aa15.86■□□□□ 0.13
VPS4A-204ENST00000566354 IPO4Q8TEX9 1081 aaKnown RBP15.86■□□□□ 0.13
VPS4A-204ENST00000566354 PRDM4Q9UKN5 801 aa15.86■□□□□ 0.13
VPS4A-204ENST00000566354 GADD45BO75293 160 aaPredicted RBP15.85■□□□□ 0.13
VPS4A-204ENST00000566354 UVSSAQ2YD98 709 aa15.85■□□□□ 0.13
VPS4A-204ENST00000566354 TJP1Q07157 1748 aa15.85■□□□□ 0.13
VPS4A-204ENST00000566354 SBF2Q86WG5 1849 aa15.85■□□□□ 0.13
VPS4A-204ENST00000566354 NPM3O75607 178 aaKnown RBP15.85■□□□□ 0.13
VPS4A-204ENST00000566354 RBM6P78332 1123 aaKnown RBP15.85■□□□□ 0.13
VPS4A-204ENST00000566354 HSP90AB4PQ58FF6 505 aa15.85■□□□□ 0.13
VPS4A-204ENST00000566354 TTC14Q96N46 770 aa15.85■□□□□ 0.13
VPS4A-204ENST00000566354 TEX13AQ9BXU3 409 aaPredicted RBP15.85■□□□□ 0.13
VPS4A-204ENST00000566354 SNX14Q9Y5W7 946 aa15.85■□□□□ 0.13
VPS4A-204ENST00000566354 LOC102724428A0A0B4J2F2 783 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 SRGAP3O43295 1099 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 LETM1O95202 739 aaPredicted RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 SIK1P57059 783 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 BEND3Q5T5X7 828 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 GDPD2Q9HCC8 539 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 BTAF1O14981 1849 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 STARD3NLO95772 234 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 DDX58O95786 925 aaKnown RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 CYP19A1P11511 503 aaPredicted RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 FOXD4L6Q3SYB3 417 aaPredicted RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 FOXD4L3Q6VB84 417 aaPredicted RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 RIC3Q7Z5B4 369 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 LSG1Q9H089 658 aaKnown RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 RGS17Q9UGC6 210 aaPredicted RBP15.84■□□□□ 0.13
VPS4A-204ENST00000566354 LIMCH1Q9UPQ0 1083 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 NHSQ6T4R5 1651 aa15.84■□□□□ 0.13
VPS4A-204ENST00000566354 RPAP1Q9BWH6 1393 aaPredicted RBP15.83■□□□□ 0.13
VPS4A-204ENST00000566354 PTMAP06454 111 aaKnown RBP15.83■□□□□ 0.12
VPS4A-204ENST00000566354 ZSCAN22P10073 491 aaPredicted RBP15.83■□□□□ 0.12
VPS4A-204ENST00000566354 ATP6V1AP38606 617 aa15.83■□□□□ 0.12
VPS4A-204ENST00000566354 ZNF330Q9Y3S2 320 aaPredicted RBP15.83■□□□□ 0.12
VPS4A-204ENST00000566354 MAP4K4O95819 1239 aaPredicted RBP15.83■□□□□ 0.12
VPS4A-204ENST00000566354 ITPK1Q13572 414 aa15.83■□□□□ 0.12
VPS4A-204ENST00000566354 CCDC183Q5T5S1 534 aa15.83■□□□□ 0.12
VPS4A-204ENST00000566354 TTLL7Q6ZT98 887 aa15.83■□□□□ 0.12
VPS4A-204ENST00000566354 ANKRD13DQ6ZTN6 518 aa15.83■□□□□ 0.12
VPS4A-204ENST00000566354 KRT27Q7Z3Y8 459 aa15.83■□□□□ 0.12
VPS4A-204ENST00000566354 NAP1L2Q9ULW6 460 aaPredicted RBP15.83■□□□□ 0.12
VPS4A-204ENST00000566354 ATP6V1DQ9Y5K8 247 aa15.83■□□□□ 0.12
VPS4A-204ENST00000566354 KCNQ4P56696 695 aa15.82■□□□□ 0.12
VPS4A-204ENST00000566354 SMARCC1Q92922 1105 aaPredicted RBP15.82■□□□□ 0.12
VPS4A-204ENST00000566354 MAP7D2Q96T17 732 aa15.82■□□□□ 0.12
VPS4A-204ENST00000566354 USP42Q9H9J4 1324 aaKnown RBP15.82■□□□□ 0.12
VPS4A-204ENST00000566354 STX6O43752 255 aa15.82■□□□□ 0.12
VPS4A-204ENST00000566354 AK2P54819 239 aa15.82■□□□□ 0.12
VPS4A-204ENST00000566354 CWF19L2Q2TBE0 894 aaKnown RBP15.82■□□□□ 0.12
VPS4A-204ENST00000566354 ZBTB1Q9Y2K1 713 aa15.82■□□□□ 0.12
VPS4A-204ENST00000566354 TTC41PQ6P2S7 1318 aa15.82■□□□□ 0.12
VPS4A-204ENST00000566354 NBPF7P0C2Y1 421 aaPredicted RBP15.81■□□□□ 0.12
VPS4A-204ENST00000566354 UBE2HP62256 183 aa15.81■□□□□ 0.12
VPS4A-204ENST00000566354 RASEFQ8IZ41 740 aa15.81■□□□□ 0.12
VPS4A-204ENST00000566354 TCHHQ07283 1943 aa15.81■□□□□ 0.12
VPS4A-204ENST00000566354 GLRX3O76003 335 aaKnown RBP15.8■□□□□ 0.12
VPS4A-204ENST00000566354 SYT1P21579 422 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 RUFY3Q7L099 469 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 RUFY2Q8WXA3 655 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 CNPY2Q9Y2B0 182 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 ARFGEF2Q9Y6D5 1785 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 UQCRHLA0A096LP55 91 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 UQCRHP07919 91 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 KIAA2012Q0VF49 1180 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 CWC27Q6UX04 472 aaKnown RBP15.8■□□□□ 0.12
VPS4A-204ENST00000566354 SMC3Q9UQE7 1217 aa15.8■□□□□ 0.12
VPS4A-204ENST00000566354 MYH14Q7Z406 1995 aaKnown RBP15.8■□□□□ 0.12
VPS4A-204ENST00000566354 IGKV5-2P06315 115 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 RXRBP28702 533 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 POTEAQ6S8J7 498 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 SASS6Q6UVJ0 657 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 DYNC1I1O14576 645 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 F13A1P00488 732 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 LINS1Q8NG48 757 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 PLBD2Q8NHP8 589 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 MYD88Q99836 296 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 METTL22Q9BUU2 404 aaPredicted RBP15.79■□□□□ 0.12
VPS4A-204ENST00000566354 ZBTB3Q9H5J0 574 aa15.79■□□□□ 0.12
VPS4A-204ENST00000566354 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.79■□□□□ 0.12
VPS4A-204ENST00000566354 DIAPH3Q9NSV4 1193 aa15.78■□□□□ 0.12
VPS4A-204ENST00000566354 CRKLP46109 303 aaKnown RBP15.78■□□□□ 0.12
VPS4A-204ENST00000566354 MTX1Q13505 466 aa15.78■□□□□ 0.12
VPS4A-204ENST00000566354 INTS5Q6P9B9 1019 aaKnown RBP15.78■□□□□ 0.12
VPS4A-204ENST00000566354 ZSCAN31Q96LW9 406 aaPredicted RBP15.78■□□□□ 0.12
VPS4A-204ENST00000566354 CASTP20810 708 aaKnown RBP15.77■□□□□ 0.12
VPS4A-204ENST00000566354 VPS53Q5VIR6 699 aa15.77■□□□□ 0.12
VPS4A-204ENST00000566354 FAM196AQ6ZSG2 479 aa15.77■□□□□ 0.12
VPS4A-204ENST00000566354 CLASRPQ8N2M8 674 aaKnown RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms