RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 LTBP3Q9NS15 1303 aa16.43■□□□□ 0.22
NEDD8-208ENST00000560427 SLX4Q8IY92 1834 aa16.42■□□□□ 0.22
NEDD8-208ENST00000560427 PPEF1O14829 653 aaPredicted RBP16.42■□□□□ 0.22
NEDD8-208ENST00000560427 C21orf2O43822 256 aa16.42■□□□□ 0.22
NEDD8-208ENST00000560427 ARHGAP27Q6ZUM4 889 aa16.42■□□□□ 0.22
NEDD8-208ENST00000560427 TRIM27P14373 513 aa16.41■□□□□ 0.22
NEDD8-208ENST00000560427 ZKSCAN2Q63HK3 967 aa16.41■□□□□ 0.22
NEDD8-208ENST00000560427 RTKN2Q8IZC4 609 aa16.41■□□□□ 0.22
NEDD8-208ENST00000560427 TMX4Q9H1E5 349 aaPredicted RBP16.41■□□□□ 0.22
NEDD8-208ENST00000560427 GOLGB1Q14789 3259 aaKnown RBP16.41■□□□□ 0.22
NEDD8-208ENST00000560427 CACNA1SQ13698 1873 aa16.41■□□□□ 0.22
NEDD8-208ENST00000560427 UTRNP46939 3433 aa16.4■□□□□ 0.22
NEDD8-208ENST00000560427 SNED1Q8TER0 1413 aa16.4■□□□□ 0.22
NEDD8-208ENST00000560427 TTLL11Q8NHH1 800 aa16.4■□□□□ 0.22
NEDD8-208ENST00000560427 JARID2Q92833 1246 aaPredicted RBP16.4■□□□□ 0.22
NEDD8-208ENST00000560427 FRAT1Q92837 279 aaPredicted RBP16.4■□□□□ 0.22
NEDD8-208ENST00000560427 HDAC5Q9UQL6 1122 aa16.4■□□□□ 0.22
NEDD8-208ENST00000560427 ATP6V0A2Q9Y487 856 aa16.4■□□□□ 0.22
NEDD8-208ENST00000560427 MYH3P11055 1940 aa16.4■□□□□ 0.22
NEDD8-208ENST00000560427 CHD4Q14839 1912 aa16.39■□□□□ 0.21
NEDD8-208ENST00000560427 INTS3Q68E01 1043 aaKnown RBP16.39■□□□□ 0.21
NEDD8-208ENST00000560427 YTHDC1Q96MU7 727 aaKnown RBP16.39■□□□□ 0.21
NEDD8-208ENST00000560427 CDC5LQ99459 802 aaKnown RBP16.39■□□□□ 0.21
NEDD8-208ENST00000560427 TAOK3Q9H2K8 898 aa16.39■□□□□ 0.21
NEDD8-208ENST00000560427 RCAN3Q9UKA8 241 aa16.39■□□□□ 0.21
NEDD8-208ENST00000560427 LRRC37AA6NMS7 1700 aa16.39■□□□□ 0.21
NEDD8-208ENST00000560427 FER1L6Q2WGJ9 1857 aa16.38■□□□□ 0.21
NEDD8-208ENST00000560427 NFKBIEO00221 500 aa16.38■□□□□ 0.21
NEDD8-208ENST00000560427 CSF1RP07333 972 aa16.38■□□□□ 0.21
NEDD8-208ENST00000560427 SP8Q8IXZ3 490 aa16.38■□□□□ 0.21
NEDD8-208ENST00000560427 PSMD1Q99460 953 aa16.38■□□□□ 0.21
NEDD8-208ENST00000560427 NBPF7P0C2Y1 421 aaPredicted RBP16.37■□□□□ 0.21
NEDD8-208ENST00000560427 MS4A1P11836 297 aa16.37■□□□□ 0.21
NEDD8-208ENST00000560427 LMNB1P20700 586 aa16.37■□□□□ 0.21
NEDD8-208ENST00000560427 FKBP4Q02790 459 aaKnown RBP eCLIP16.37■□□□□ 0.21
NEDD8-208ENST00000560427 CELF1Q92879 486 aaKnown RBP16.37■□□□□ 0.21
NEDD8-208ENST00000560427 USP44Q9H0E7 712 aa16.37■□□□□ 0.21
NEDD8-208ENST00000560427 ZC3H4Q9UPT8 1303 aaKnown RBP16.37■□□□□ 0.21
NEDD8-208ENST00000560427 RPS8P62241 208 aaKnown RBP16.36■□□□□ 0.21
NEDD8-208ENST00000560427 FOXO4P98177 505 aa16.36■□□□□ 0.21
NEDD8-208ENST00000560427 ANKRD18AQ8IVF6 992 aa16.36■□□□□ 0.21
NEDD8-208ENST00000560427 FTSJ3Q8IY81 847 aaKnown RBP16.36■□□□□ 0.21
NEDD8-208ENST00000560427 GREM2Q9H772 168 aa16.36■□□□□ 0.21
NEDD8-208ENST00000560427 ZNF219Q9P2Y4 722 aaPredicted RBP16.36■□□□□ 0.21
NEDD8-208ENST00000560427 UBTFL1P0CB47 393 aaPredicted RBP16.35■□□□□ 0.21
NEDD8-208ENST00000560427 RABL6Q3YEC7 729 aaPredicted RBP16.35■□□□□ 0.21
NEDD8-208ENST00000560427 DZIP1LQ8IYY4 767 aaKnown RBP16.35■□□□□ 0.21
NEDD8-208ENST00000560427 SEC31BQ9NQW1 1179 aa16.35■□□□□ 0.21
NEDD8-208ENST00000560427 GNAI3P08754 354 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 ITGA6P23229 1130 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 YY1P25490 414 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 RASSF7Q02833 373 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 FAM161AQ3B820 660 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 SUPT20HQ8NEM7 779 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 SUCLG2Q96I99 432 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 CCDC85AQ96PX6 553 aaPredicted RBP16.34■□□□□ 0.21
NEDD8-208ENST00000560427 VPS33BQ9H267 617 aa16.34■□□□□ 0.21
NEDD8-208ENST00000560427 ANKRD18BA2A2Z9 1011 aa16.33■□□□□ 0.2
NEDD8-208ENST00000560427 IGHMBP2P38935 993 aaKnown RBP16.33■□□□□ 0.2
NEDD8-208ENST00000560427 IFIT5Q13325 482 aaKnown RBP16.33■□□□□ 0.2
NEDD8-208ENST00000560427 C9orf131Q5VYM1 1079 aa16.33■□□□□ 0.2
NEDD8-208ENST00000560427 LMBR1LQ6UX01 489 aa16.33■□□□□ 0.2
NEDD8-208ENST00000560427 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.33■□□□□ 0.2
NEDD8-208ENST00000560427 KAZALD1Q96I82 304 aa16.33■□□□□ 0.2
NEDD8-208ENST00000560427 RTFDC1Q9BY42 306 aaPredicted RBP16.33■□□□□ 0.2
NEDD8-208ENST00000560427 BSDC1Q9NW68 430 aaPredicted RBP16.33■□□□□ 0.2
NEDD8-208ENST00000560427 RNF181Q9P0P0 153 aa16.33■□□□□ 0.2
NEDD8-208ENST00000560427 COL4A1P02462 1669 aa16.33■□□□□ 0.2
NEDD8-208ENST00000560427 CCDC57Q2TAC2 916 aa16.32■□□□□ 0.2
NEDD8-208ENST00000560427 EPHA10Q5JZY3 1008 aa16.32■□□□□ 0.2
NEDD8-208ENST00000560427 OLFM4Q6UX06 510 aa16.32■□□□□ 0.2
NEDD8-208ENST00000560427 DPP8Q6V1X1 898 aaPredicted RBP16.32■□□□□ 0.2
NEDD8-208ENST00000560427 MPNDQ8N594 471 aa16.32■□□□□ 0.2
NEDD8-208ENST00000560427 CLUAP1Q96AJ1 413 aa16.32■□□□□ 0.2
NEDD8-208ENST00000560427 TMEM57Q8N5G2 664 aa16.31■□□□□ 0.2
NEDD8-208ENST00000560427 BICC1Q9H694 974 aaKnown RBP16.31■□□□□ 0.2
NEDD8-208ENST00000560427 PODXL2Q9NZ53 605 aa16.31■□□□□ 0.2
NEDD8-208ENST00000560427 CHMP3Q9Y3E7 222 aa16.31■□□□□ 0.2
NEDD8-208ENST00000560427 SBF1O95248 1867 aa16.31■□□□□ 0.2
NEDD8-208ENST00000560427 LTBP1Q14766 1721 aa16.31■□□□□ 0.2
NEDD8-208ENST00000560427 DUOX1Q9NRD9 1551 aa16.3■□□□□ 0.2
NEDD8-208ENST00000560427 IARSP41252 1262 aaKnown RBP16.3■□□□□ 0.2
NEDD8-208ENST00000560427 ANKRD44Q8N8A2 993 aa16.3■□□□□ 0.2
NEDD8-208ENST00000560427 MPHOSPH8Q99549 860 aa16.3■□□□□ 0.2
NEDD8-208ENST00000560427 MEIS3Q99687 375 aa16.3■□□□□ 0.2
NEDD8-208ENST00000560427 TNNQ9UQP3 1299 aa16.3■□□□□ 0.2
NEDD8-208ENST00000560427 TIAM2Q8IVF5 1701 aa16.3■□□□□ 0.2
NEDD8-208ENST00000560427 TAF1P21675 1872 aa16.29■□□□□ 0.2
NEDD8-208ENST00000560427 XDHP47989 1333 aa16.29■□□□□ 0.2
NEDD8-208ENST00000560427 PRELPP51888 382 aa16.29■□□□□ 0.2
NEDD8-208ENST00000560427 ZNF277Q9NRM2 450 aaPredicted RBP16.29■□□□□ 0.2
NEDD8-208ENST00000560427 NSFL1CQ9UNZ2 370 aaKnown RBP16.29■□□□□ 0.2
NEDD8-208ENST00000560427 TAF7LQ5H9L4 462 aa16.28■□□□□ 0.2
NEDD8-208ENST00000560427 ITPRIPQ8IWB1 547 aa16.28■□□□□ 0.2
NEDD8-208ENST00000560427 ANKRD2Q9GZV1 360 aa16.28■□□□□ 0.2
NEDD8-208ENST00000560427 LRRFIP2Q9Y608 721 aaKnown RBP16.28■□□□□ 0.2
NEDD8-208ENST00000560427 DICER1Q9UPY3 1922 aaKnown RBP16.27■□□□□ 0.2
NEDD8-208ENST00000560427 GNAI2P04899 355 aa16.27■□□□□ 0.2
NEDD8-208ENST00000560427 RLBP1P12271 317 aa16.27■□□□□ 0.2
NEDD8-208ENST00000560427 GPSM2P81274 684 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms