RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 COL23A1Q86Y22 540 aaPredicted RBP13.86□□□□□ -0.19
USP3-218ENST00000560202 CCDC125Q86Z20 511 aa13.86□□□□□ -0.19
USP3-218ENST00000560202 CCDC85AQ96PX6 553 aaPredicted RBP13.86□□□□□ -0.19
USP3-218ENST00000560202 SIL1Q9H173 461 aa13.86□□□□□ -0.19
USP3-218ENST00000560202 GTF2E1P29083 439 aaPredicted RBP13.85□□□□□ -0.19
USP3-218ENST00000560202 FAM161AQ3B820 660 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 ERFEQ4G0M1 354 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 TPTE2Q6XPS3 522 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 ERICH6Q7L0X2 663 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 NBPF5PQ86XG9 351 aaPredicted RBP13.85□□□□□ -0.19
USP3-218ENST00000560202 IL1RAPL2Q9NP60 686 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 SASH1O94885 1247 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 IFIT5Q13325 482 aaKnown RBP13.85□□□□□ -0.19
USP3-218ENST00000560202 SLC15A2Q16348 729 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 SLC10A5Q5PT55 438 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 GREM2Q9H772 168 aa13.85□□□□□ -0.19
USP3-218ENST00000560202 CARMIL3Q8ND23 1372 aa13.84□□□□□ -0.19
USP3-218ENST00000560202 PLEKHM2Q8IWE5 1019 aa13.84□□□□□ -0.19
USP3-218ENST00000560202 OTUD7AQ8TE49 926 aaPredicted RBP13.84□□□□□ -0.19
USP3-218ENST00000560202 ZNF594Q96JF6 807 aaPredicted RBP13.84□□□□□ -0.19
USP3-218ENST00000560202 ANO8Q9HCE9 1232 aaPredicted RBP13.84□□□□□ -0.19
USP3-218ENST00000560202 STK32BQ9NY57 414 aa13.84□□□□□ -0.19
USP3-218ENST00000560202 PNPLA7Q6ZV29 1317 aa13.84□□□□□ -0.19
USP3-218ENST00000560202 ANKRD18BA2A2Z9 1011 aa13.83□□□□□ -0.2
USP3-218ENST00000560202 ITGA6P23229 1130 aa13.83□□□□□ -0.2
USP3-218ENST00000560202 TM4SF1P30408 202 aa13.83□□□□□ -0.2
USP3-218ENST00000560202 COL24A1Q17RW2 1714 aa13.83□□□□□ -0.2
USP3-218ENST00000560202 EYA2O00167 538 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 CCDC152Q4G0S7 254 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 TAF7LQ5H9L4 462 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 CLASRPQ8N2M8 674 aaKnown RBP13.82□□□□□ -0.2
USP3-218ENST00000560202 NLGN1Q8N2Q7 840 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 FBXO3Q9UK99 471 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 ABCC12Q96J65 1359 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 NPHP1O15259 732 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 CIAO1O76071 339 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 IL15P40933 162 aaPredicted RBP13.82□□□□□ -0.2
USP3-218ENST00000560202 ATG9AQ7Z3C6 839 aa13.82□□□□□ -0.2
USP3-218ENST00000560202 SALL3Q9BXA9 1300 aa13.81□□□□□ -0.2
USP3-218ENST00000560202 SERPINB2P05120 415 aa13.81□□□□□ -0.2
USP3-218ENST00000560202 SF3B3Q15393 1217 aaKnown RBP13.81□□□□□ -0.2
USP3-218ENST00000560202 LRRC24Q50LG9 513 aa13.81□□□□□ -0.2
USP3-218ENST00000560202 CNBD1Q8NA66 436 aa13.81□□□□□ -0.2
USP3-218ENST00000560202 PUS3Q9BZE2 481 aaKnown RBP13.81□□□□□ -0.2
USP3-218ENST00000560202 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.81□□□□□ -0.2
USP3-218ENST00000560202 DDX60Q8IY21 1712 aaKnown RBP13.81□□□□□ -0.2
USP3-218ENST00000560202 RTL9Q8NET4 1388 aa13.81□□□□□ -0.2
USP3-218ENST00000560202 MX1P20591 662 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 PDE1AP54750 535 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 DDR1Q08345 913 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 TFCP2Q12800 502 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 C3orf67Q6ZVT6 689 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 CCDC24Q8N4L8 307 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 NLRP3Q96P20 1036 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 OSBPL3Q9H4L5 887 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 LAMB2P55268 1798 aa13.8□□□□□ -0.2
USP3-218ENST00000560202 TUBGCP6Q96RT7 1819 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 POLRMTO00411 1230 aaKnown RBP13.79□□□□□ -0.2
USP3-218ENST00000560202 PRR5LQ6MZQ0 368 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 LDHAL6AQ6ZMR3 332 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 AACSQ86V21 672 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 SEC31BQ9NQW1 1179 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 STAP2Q9UGK3 403 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 IFIT2P09913 472 aaKnown RBP13.79□□□□□ -0.2
USP3-218ENST00000560202 BMP2KLQ5H9B9 411 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 TTC22Q5TAA0 569 aa13.79□□□□□ -0.2
USP3-218ENST00000560202 EAF2Q96CJ1 260 aaPredicted RBP13.79□□□□□ -0.2
USP3-218ENST00000560202 MYH3P11055 1940 aa13.78□□□□□ -0.2
USP3-218ENST00000560202 TNNI3KQ59H18 835 aa13.78□□□□□ -0.2
USP3-218ENST00000560202 CNNM1Q9NRU3 951 aa13.78□□□□□ -0.2
USP3-218ENST00000560202 RIPOR2Q9Y4F9 1068 aa13.78□□□□□ -0.2
USP3-218ENST00000560202 FPGT-TNNI3KV9GXZ4 949 aa13.78□□□□□ -0.2
USP3-218ENST00000560202 GSPT1P15170 499 aaKnown RBP13.77□□□□□ -0.21
USP3-218ENST00000560202 ST5P78524 1137 aa13.77□□□□□ -0.21
USP3-218ENST00000560202 TSHZ3Q63HK5 1081 aa13.77□□□□□ -0.21
USP3-218ENST00000560202 BACH2Q9BYV9 841 aa13.77□□□□□ -0.21
USP3-218ENST00000560202 CCDC8Q9H0W5 538 aaPredicted RBP13.77□□□□□ -0.21
USP3-218ENST00000560202 GPR108Q9NPR9 543 aa13.77□□□□□ -0.21
USP3-218ENST00000560202 CEP126Q9P2H0 1117 aa13.77□□□□□ -0.21
USP3-218ENST00000560202 RIC1Q4ADV7 1423 aa13.76□□□□□ -0.21
USP3-218ENST00000560202 AOX1Q06278 1338 aa13.76□□□□□ -0.21
USP3-218ENST00000560202 IGHMBP2P38935 993 aaKnown RBP13.76□□□□□ -0.21
USP3-218ENST00000560202 C8orf34Q49A92 452 aa13.76□□□□□ -0.21
USP3-218ENST00000560202 CDC5LQ99459 802 aaKnown RBP13.76□□□□□ -0.21
USP3-218ENST00000560202 MPHOSPH8Q99549 860 aa13.76□□□□□ -0.21
USP3-218ENST00000560202 TTC41PQ6P2S7 1318 aa13.76□□□□□ -0.21
USP3-218ENST00000560202 MMP10P09238 476 aa13.75□□□□□ -0.21
USP3-218ENST00000560202 MSL1Q68DK7 614 aa13.75□□□□□ -0.21
USP3-218ENST00000560202 UPF1Q92900 1129 aaKnown RBP eCLIP13.75□□□□□ -0.21
USP3-218ENST00000560202 PARP3Q9Y6F1 533 aa13.75□□□□□ -0.21
USP3-218ENST00000560202 METTL24Q5JXM2 366 aa13.75□□□□□ -0.21
USP3-218ENST00000560202 ANKRD18AQ8IVF6 992 aa13.75□□□□□ -0.21
USP3-218ENST00000560202 GPATCH3Q96I76 525 aa13.75□□□□□ -0.21
USP3-218ENST00000560202 ECHDC1Q9NTX5 307 aa13.75□□□□□ -0.21
USP3-218ENST00000560202 TLR7Q9NYK1 1049 aaKnown RBP13.75□□□□□ -0.21
USP3-218ENST00000560202 LRP5O75197 1615 aa13.74□□□□□ -0.21
USP3-218ENST00000560202 MROH5Q6ZUA9 1318 aa13.74□□□□□ -0.21
USP3-218ENST00000560202 PI4K2BQ8TCG2 481 aa13.74□□□□□ -0.21
USP3-218ENST00000560202 DBNLQ9UJU6 430 aaKnown RBP13.74□□□□□ -0.21
USP3-218ENST00000560202 AKAP2Q9Y2D5 859 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms