RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 GTF3C3Q9Y5Q9 886 aa11.8□□□□□ -0.52
HERC1-206ENST00000559996 LRRFIP2Q9Y608 721 aaKnown RBP11.8□□□□□ -0.52
HERC1-206ENST00000559996 FAM177BA6PVY3 158 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 IGHDP01880 384 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 GNAI2P04899 355 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 SERPINB2P05120 415 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 CSF1RP07333 972 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 ATP8B2P98198 1209 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 RABL6Q3YEC7 729 aaPredicted RBP11.79□□□□□ -0.52
HERC1-206ENST00000559996 ERFEQ4G0M1 354 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 MSL1Q68DK7 614 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 CEP85Q6P2H3 762 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 C3orf67Q6ZVT6 689 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 PPP1R42Q7Z4L9 355 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 NUTM1Q86Y26 1132 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 SGIP1Q9BQI5 828 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 NRXN2Q9P2S2 1712 aa11.79□□□□□ -0.52
HERC1-206ENST00000559996 PNMA6EA0A0J9YXQ4 647 aa11.78□□□□□ -0.52
HERC1-206ENST00000559996 NEFLP07196 543 aa11.78□□□□□ -0.52
HERC1-206ENST00000559996 UBTFL1P0CB47 393 aaPredicted RBP11.78□□□□□ -0.52
HERC1-206ENST00000559996 MTX1Q13505 466 aa11.78□□□□□ -0.52
HERC1-206ENST00000559996 PRR5LQ6MZQ0 368 aa11.78□□□□□ -0.52
HERC1-206ENST00000559996 BICC1Q9H694 974 aaKnown RBP11.78□□□□□ -0.52
HERC1-206ENST00000559996 PSDA5PKW4 1024 aaPredicted RBP11.77□□□□□ -0.53
HERC1-206ENST00000559996 IRS4O14654 1257 aaPredicted RBP11.77□□□□□ -0.53
HERC1-206ENST00000559996 MMP10P09238 476 aa11.77□□□□□ -0.53
HERC1-206ENST00000559996 HCLS1P14317 486 aaPredicted RBP11.77□□□□□ -0.53
HERC1-206ENST00000559996 RFX5P48382 616 aaPredicted RBP11.77□□□□□ -0.53
HERC1-206ENST00000559996 TPTE2Q6XPS3 522 aa11.77□□□□□ -0.53
HERC1-206ENST00000559996 RPAP2Q8IXW5 612 aaPredicted RBP11.77□□□□□ -0.53
HERC1-206ENST00000559996 CCDC24Q8N4L8 307 aa11.77□□□□□ -0.53
HERC1-206ENST00000559996 TTLL11Q8NHH1 800 aa11.77□□□□□ -0.53
HERC1-206ENST00000559996 CHMP4BQ9H444 224 aaKnown RBP11.77□□□□□ -0.53
HERC1-206ENST00000559996 SH3TC1Q8TE82 1336 aa11.77□□□□□ -0.53
HERC1-206ENST00000559996 CARMIL3Q8ND23 1372 aa11.77□□□□□ -0.53
HERC1-206ENST00000559996 ABCC12Q96J65 1359 aa11.77□□□□□ -0.53
HERC1-206ENST00000559996 DDX60Q8IY21 1712 aaKnown RBP11.77□□□□□ -0.53
HERC1-206ENST00000559996 KLRG2A4D1S0 409 aaPredicted RBP11.76□□□□□ -0.53
HERC1-206ENST00000559996 SOCS7O14512 581 aa11.76□□□□□ -0.53
HERC1-206ENST00000559996 PDE8AO60658 829 aa11.76□□□□□ -0.53
HERC1-206ENST00000559996 NBPF5PQ86XG9 351 aaPredicted RBP11.76□□□□□ -0.53
HERC1-206ENST00000559996 SSH3Q8TE77 659 aa11.76□□□□□ -0.53
HERC1-206ENST00000559996 PPP4R2Q9NY27 417 aa11.76□□□□□ -0.53
HERC1-206ENST00000559996 ZBTB7AO95365 584 aa11.75□□□□□ -0.53
HERC1-206ENST00000559996 HDAC1Q13547 482 aaPredicted RBP11.75□□□□□ -0.53
HERC1-206ENST00000559996 SF3B3Q15393 1217 aaKnown RBP11.75□□□□□ -0.53
HERC1-206ENST00000559996 LMBR1LQ6UX01 489 aa11.75□□□□□ -0.53
HERC1-206ENST00000559996 NYXQ9GZU5 481 aa11.75□□□□□ -0.53
HERC1-206ENST00000559996 COL4A1P02462 1669 aa11.75□□□□□ -0.53
HERC1-206ENST00000559996 PTGER2P43116 358 aa11.74□□□□□ -0.53
HERC1-206ENST00000559996 MTFR1LQ9H019 292 aa11.74□□□□□ -0.53
HERC1-206ENST00000559996 TSPYL2Q9H2G4 693 aaPredicted RBP11.74□□□□□ -0.53
HERC1-206ENST00000559996 CTSWP56202 376 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 PTPN12Q05209 780 aaKnown RBP11.73□□□□□ -0.53
HERC1-206ENST00000559996 CRY2Q49AN0 593 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 RIC1Q4ADV7 1423 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 B4GALNT3Q6L9W6 998 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 ANKRD31Q8N7Z5 1873 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 KDM2BQ8NHM5 1336 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 DCTPP1Q9H773 170 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 TNRC6CQ9HCJ0 1690 aaKnown RBP11.73□□□□□ -0.53
HERC1-206ENST00000559996 PARP3Q9Y6F1 533 aa11.73□□□□□ -0.53
HERC1-206ENST00000559996 LAMB2P55268 1798 aa11.72□□□□□ -0.53
HERC1-206ENST00000559996 CNBD1Q8NA66 436 aa11.72□□□□□ -0.53
HERC1-206ENST00000559996 KLHDC4Q8TBB5 520 aa11.72□□□□□ -0.53
HERC1-206ENST00000559996 MS4A3Q96HJ5 214 aa11.72□□□□□ -0.53
HERC1-206ENST00000559996 GREM2Q9H772 168 aa11.72□□□□□ -0.53
HERC1-206ENST00000559996 SEC31BQ9NQW1 1179 aa11.72□□□□□ -0.53
HERC1-206ENST00000559996 HDAC5Q9UQL6 1122 aa11.72□□□□□ -0.53
HERC1-206ENST00000559996 NOP58Q9Y2X3 529 aaKnown RBP11.72□□□□□ -0.53
HERC1-206ENST00000559996 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.72□□□□□ -0.53
HERC1-206ENST00000559996 MYH3P11055 1940 aa11.71□□□□□ -0.53
HERC1-206ENST00000559996 SRGAP3O43295 1099 aa11.71□□□□□ -0.53
HERC1-206ENST00000559996 FAM161AQ3B820 660 aa11.71□□□□□ -0.53
HERC1-206ENST00000559996 SMC5Q8IY18 1101 aa11.71□□□□□ -0.53
HERC1-206ENST00000559996 ZNF594Q96JF6 807 aaPredicted RBP11.71□□□□□ -0.53
HERC1-206ENST00000559996 NLRP3Q96P20 1036 aa11.71□□□□□ -0.53
HERC1-206ENST00000559996 CCDC85AQ96PX6 553 aaPredicted RBP11.71□□□□□ -0.53
HERC1-206ENST00000559996 BRIP1Q9BX63 1249 aa11.71□□□□□ -0.53
HERC1-206ENST00000559996 COPRSQ9NQ92 184 aa11.71□□□□□ -0.53
HERC1-206ENST00000559996 PA2G4Q9UQ80 394 aaKnown RBP11.71□□□□□ -0.53
HERC1-206ENST00000559996 TAF1P21675 1872 aa11.7□□□□□ -0.54
HERC1-206ENST00000559996 RTL9Q8NET4 1388 aa11.7□□□□□ -0.54
HERC1-206ENST00000559996 ITGA6P23229 1130 aa11.7□□□□□ -0.54
HERC1-206ENST00000559996 GTF2E1P29083 439 aaPredicted RBP11.7□□□□□ -0.54
HERC1-206ENST00000559996 ATG9AQ7Z3C6 839 aa11.7□□□□□ -0.54
HERC1-206ENST00000559996 PUS3Q9BZE2 481 aaKnown RBP11.7□□□□□ -0.54
HERC1-206ENST00000559996 RWDD1Q9H446 243 aaPredicted RBP11.7□□□□□ -0.54
HERC1-206ENST00000559996 KCNA3P22001 575 aa11.69□□□□□ -0.54
HERC1-206ENST00000559996 HOXA10P31260 410 aaPredicted RBP11.69□□□□□ -0.54
HERC1-206ENST00000559996 SLC51AQ86UW1 340 aa11.69□□□□□ -0.54
HERC1-206ENST00000559996 C10orf71Q711Q0 1435 aa11.69□□□□□ -0.54
HERC1-206ENST00000559996 KIF13BQ9NQT8 1826 aa11.68□□□□□ -0.54
HERC1-206ENST00000559996 SASH1O94885 1247 aa11.68□□□□□ -0.54
HERC1-206ENST00000559996 SRGNP10124 158 aa11.68□□□□□ -0.54
HERC1-206ENST00000559996 ST5P78524 1137 aa11.68□□□□□ -0.54
HERC1-206ENST00000559996 LRRC24Q50LG9 513 aa11.68□□□□□ -0.54
HERC1-206ENST00000559996 CELF1Q92879 486 aaKnown RBP11.68□□□□□ -0.54
HERC1-206ENST00000559996 CCDC136Q96JN2 1154 aa11.68□□□□□ -0.54
HERC1-206ENST00000559996 RIPOR2Q9Y4F9 1068 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms