RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 CDHR2Q9BYE9 1310 aa17.12■□□□□ 0.33
TPM1-220ENST00000559556 HOXB7P09629 217 aa17.11■□□□□ 0.33
TPM1-220ENST00000559556 CTCFP49711 727 aaPredicted RBP17.11■□□□□ 0.33
TPM1-220ENST00000559556 NEUROD2Q15784 382 aa17.11■□□□□ 0.33
TPM1-220ENST00000559556 AIDAQ96BJ3 306 aa17.11■□□□□ 0.33
TPM1-220ENST00000559556 RUNDC1Q96C34 613 aa17.11■□□□□ 0.33
TPM1-220ENST00000559556 CHPF2Q9P2E5 772 aa17.11■□□□□ 0.33
TPM1-220ENST00000559556 TRMT112Q9UI30 125 aaKnown RBP17.11■□□□□ 0.33
TPM1-220ENST00000559556 ZNRF3Q9ULT6 936 aa17.11■□□□□ 0.33
TPM1-220ENST00000559556 CXCL9Q07325 125 aa17.1■□□□□ 0.33
TPM1-220ENST00000559556 KIAA2012Q0VF49 1180 aa17.1■□□□□ 0.33
TPM1-220ENST00000559556 GRAPQ13588 217 aa17.1■□□□□ 0.33
TPM1-220ENST00000559556 DPP8Q6V1X1 898 aaPredicted RBP17.1■□□□□ 0.33
TPM1-220ENST00000559556 DDX46Q7L014 1031 aaKnown RBP17.1■□□□□ 0.33
TPM1-220ENST00000559556 GRAPLQ8TC17 118 aaPredicted RBP17.1■□□□□ 0.33
TPM1-220ENST00000559556 ADARB2Q9NS39 739 aaKnown RBP17.1■□□□□ 0.33
TPM1-220ENST00000559556 WDR33Q9C0J8 1336 aaKnown RBP17.1■□□□□ 0.33
TPM1-220ENST00000559556 A0A1B0GUL6 1792 aa17.1■□□□□ 0.33
TPM1-220ENST00000559556 WDR43Q15061 677 aaKnown RBP eCLIP17.09■□□□□ 0.33
TPM1-220ENST00000559556 HDGFL1Q5TGJ6 251 aa17.09■□□□□ 0.33
TPM1-220ENST00000559556 TMC4Q7Z404 712 aa17.09■□□□□ 0.33
TPM1-220ENST00000559556 MPNDQ8N594 471 aa17.09■□□□□ 0.33
TPM1-220ENST00000559556 ABT1Q9ULW3 272 aaKnown RBP17.09■□□□□ 0.33
TPM1-220ENST00000559556 FMR1Q06787 632 aaKnown RBP eCLIP17.08■□□□□ 0.32
TPM1-220ENST00000559556 DDX10Q13206 875 aaKnown RBP17.08■□□□□ 0.32
TPM1-220ENST00000559556 PLBD2Q8NHP8 589 aa17.08■□□□□ 0.32
TPM1-220ENST00000559556 GMPSP49915 693 aaPredicted RBP17.07■□□□□ 0.32
TPM1-220ENST00000559556 ISCA1Q9BUE6 129 aa17.07■□□□□ 0.32
TPM1-220ENST00000559556 DBF4Q9UBU7 674 aaPredicted RBP17.07■□□□□ 0.32
TPM1-220ENST00000559556 LAS1LQ9Y4W2 734 aaKnown RBP17.07■□□□□ 0.32
TPM1-220ENST00000559556 ECM29Q5VYK3 1845 aa17.07■□□□□ 0.32
TPM1-220ENST00000559556 PDE4DIPQ5VU43 2346 aa17.07■□□□□ 0.32
TPM1-220ENST00000559556 TNRC18O15417 2968 aaPredicted RBP17.07■□□□□ 0.32
TPM1-220ENST00000559556 TRAF5O00463 557 aa17.06■□□□□ 0.32
TPM1-220ENST00000559556 MAP2K1Q02750 393 aaPredicted RBP17.06■□□□□ 0.32
TPM1-220ENST00000559556 CST9Q5W186 159 aa17.06■□□□□ 0.32
TPM1-220ENST00000559556 CIAPIN1Q6FI81 312 aa17.06■□□□□ 0.32
TPM1-220ENST00000559556 ANKRD13DQ6ZTN6 518 aa17.06■□□□□ 0.32
TPM1-220ENST00000559556 CFAP44Q96MT7 982 aa17.06■□□□□ 0.32
TPM1-220ENST00000559556 HSPA8P11142 646 aaKnown RBP17.05■□□□□ 0.32
TPM1-220ENST00000559556 LBX1P52954 281 aa17.05■□□□□ 0.32
TPM1-220ENST00000559556 TNIP1Q15025 636 aa17.05■□□□□ 0.32
TPM1-220ENST00000559556 CAPNS2Q96L46 248 aa17.05■□□□□ 0.32
TPM1-220ENST00000559556 HYPKQ9NX55 129 aa17.05■□□□□ 0.32
TPM1-220ENST00000559556 PGAP2Q9UHJ9 254 aa17.05■□□□□ 0.32
TPM1-220ENST00000559556 ADAMTS8Q9UP79 889 aa17.05■□□□□ 0.32
TPM1-220ENST00000559556 TLL2Q9Y6L7 1015 aa17.05■□□□□ 0.32
TPM1-220ENST00000559556 YDJCA8MPS7 323 aa17.04■□□□□ 0.32
TPM1-220ENST00000559556 ECE1P42892 770 aa17.04■□□□□ 0.32
TPM1-220ENST00000559556 SF3B3Q15393 1217 aaKnown RBP17.04■□□□□ 0.32
TPM1-220ENST00000559556 RAD17O75943 681 aa17.03■□□□□ 0.32
TPM1-220ENST00000559556 TRIM28Q13263 835 aaKnown RBP17.03■□□□□ 0.32
TPM1-220ENST00000559556 DUSP27Q5VZP5 1158 aa17.03■□□□□ 0.32
TPM1-220ENST00000559556 ZC3H15Q8WU90 426 aaKnown RBP17.03■□□□□ 0.32
TPM1-220ENST00000559556 FAM89AQ96GI7 184 aa17.03■□□□□ 0.32
TPM1-220ENST00000559556 BCL2L13Q9BXK5 485 aa17.03■□□□□ 0.32
TPM1-220ENST00000559556 MBIPQ9NS73 344 aa17.03■□□□□ 0.32
TPM1-220ENST00000559556 ATP5J2-PTCD1G3V325 749 aa17.02■□□□□ 0.32
TPM1-220ENST00000559556 ZNF853P0CG23 659 aa17.02■□□□□ 0.32
TPM1-220ENST00000559556 CYP4F22Q6NT55 531 aa17.02■□□□□ 0.32
TPM1-220ENST00000559556 CELF1Q92879 486 aaKnown RBP17.02■□□□□ 0.32
TPM1-220ENST00000559556 ZNF428Q96B54 188 aa17.02■□□□□ 0.32
TPM1-220ENST00000559556 HIRAP54198 1017 aaPredicted RBP17.01■□□□□ 0.31
TPM1-220ENST00000559556 SAPCD2Q86UD0 394 aa17.01■□□□□ 0.31
TPM1-220ENST00000559556 TRPM4Q8TD43 1214 aa17.01■□□□□ 0.31
TPM1-220ENST00000559556 GLIS2Q9BZE0 524 aaPredicted RBP17.01■□□□□ 0.31
TPM1-220ENST00000559556 CELF2O95319 508 aaKnown RBP17■□□□□ 0.31
TPM1-220ENST00000559556 WASHC4Q2M389 1173 aa17■□□□□ 0.31
TPM1-220ENST00000559556 PAXIP1Q6ZW49 1069 aaPredicted RBP17■□□□□ 0.31
TPM1-220ENST00000559556 HHIPL1Q96JK4 782 aa17■□□□□ 0.31
TPM1-220ENST00000559556 GPR101Q96P66 508 aaPredicted RBP17■□□□□ 0.31
TPM1-220ENST00000559556 PRKRIP1Q9H875 184 aaPredicted RBP17■□□□□ 0.31
TPM1-220ENST00000559556 CNOT7Q9UIV1 285 aaKnown RBP17■□□□□ 0.31
TPM1-220ENST00000559556 LAMB1P07942 1786 aa17■□□□□ 0.31
TPM1-220ENST00000559556 ZNF609O15014 1411 aa16.99■□□□□ 0.31
TPM1-220ENST00000559556 SHTN1A0MZ66 631 aa16.99■□□□□ 0.31
TPM1-220ENST00000559556 IRS4O14654 1257 aaPredicted RBP16.99■□□□□ 0.31
TPM1-220ENST00000559556 MAP2K2P36507 400 aa16.99■□□□□ 0.31
TPM1-220ENST00000559556 MICALL2Q8IY33 904 aa16.99■□□□□ 0.31
TPM1-220ENST00000559556 DPF2Q92785 391 aa16.99■□□□□ 0.31
TPM1-220ENST00000559556 IFT57Q9NWB7 429 aa16.99■□□□□ 0.31
TPM1-220ENST00000559556 NSFL1CQ9UNZ2 370 aaKnown RBP16.99■□□□□ 0.31
TPM1-220ENST00000559556 H7C1D1 291 aa16.98■□□□□ 0.31
TPM1-220ENST00000559556 PSMD14O00487 310 aa16.98■□□□□ 0.31
TPM1-220ENST00000559556 GPSM2P81274 684 aa16.98■□□□□ 0.31
TPM1-220ENST00000559556 GOLGA2Q08379 1002 aa16.98■□□□□ 0.31
TPM1-220ENST00000559556 RTL5Q5HYW3 569 aaPredicted RBP16.98■□□□□ 0.31
TPM1-220ENST00000559556 DBNDD1Q9H9R9 158 aa16.98■□□□□ 0.31
TPM1-220ENST00000559556 POLLQ9UGP5 575 aa16.98■□□□□ 0.31
TPM1-220ENST00000559556 RTL9Q8NET4 1388 aa16.98■□□□□ 0.31
TPM1-220ENST00000559556 GNAI1P63096 354 aa16.97■□□□□ 0.31
TPM1-220ENST00000559556 CALD1Q05682 793 aaKnown RBP16.97■□□□□ 0.31
TPM1-220ENST00000559556 GRM1Q13255 1194 aa16.97■□□□□ 0.31
TPM1-220ENST00000559556 CDC37L1Q7L3B6 337 aa16.97■□□□□ 0.31
TPM1-220ENST00000559556 ZBTB38Q8NAP3 1195 aaPredicted RBP16.97■□□□□ 0.31
TPM1-220ENST00000559556 BEGAINQ9BUH8 593 aa16.97■□□□□ 0.31
TPM1-220ENST00000559556 ZBTB12Q9Y330 459 aaPredicted RBP16.97■□□□□ 0.31
TPM1-220ENST00000559556 PAPPA2Q9BXP8 1791 aa16.97■□□□□ 0.31
TPM1-220ENST00000559556 C6orf229H3BNL8 230 aa16.96■□□□□ 0.31
TPM1-220ENST00000559556 APAF1O14727 1248 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms