RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 FBF1Q8TES7 1133 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 NUDT16Q96DE0 195 aaKnown RBP4.77□□□□□ -1.65
TRAV28-201ENST00000557548 CRELD1Q96HD1 420 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 SPATA32Q96LK8 384 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 CDK11AQ9UQ88 783 aaPredicted RBP4.77□□□□□ -1.65
TRAV28-201ENST00000557548 EIF1AYO14602 144 aaKnown RBP4.76□□□□□ -1.65
TRAV28-201ENST00000557548 OPLAHO14841 1288 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 CTSHP09668 335 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 PCSK2P16519 638 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 SRSF11Q05519 484 aaKnown RBP4.76□□□□□ -1.65
TRAV28-201ENST00000557548 NNTQ13423 1086 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 C8orf34Q49A92 452 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 DPH6Q7L8W6 267 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 AGBL1Q96MI9 1066 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 DNAJC2Q99543 621 aaKnown RBP4.76□□□□□ -1.65
TRAV28-201ENST00000557548 GGNBP2Q9H3C7 697 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 PRKAG2Q9UGJ0 569 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.76□□□□□ -1.65
TRAV28-201ENST00000557548 AK5Q9Y6K8 562 aa4.76□□□□□ -1.65
TRAV28-201ENST00000557548 TXLNAP40222 546 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 PTGIRP43119 386 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 ZNF394Q53GI3 561 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 TMEM214Q6NUQ4 689 aaKnown RBP4.75□□□□□ -1.65
TRAV28-201ENST00000557548 PPARGC1BQ86YN6 1023 aaKnown RBP4.75□□□□□ -1.65
TRAV28-201ENST00000557548 SLC43A3Q8NBI5 491 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 DHX38Q92620 1227 aaKnown RBP4.75□□□□□ -1.65
TRAV28-201ENST00000557548 NLRP3Q96P20 1036 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 ZSCAN10Q96SZ4 725 aaPredicted RBP4.75□□□□□ -1.65
TRAV28-201ENST00000557548 NIFKQ9BYG3 293 aaKnown RBP4.75□□□□□ -1.65
TRAV28-201ENST00000557548 SPG7Q9UQ90 795 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 BCS1LQ9Y276 419 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 PCDHGB7Q9Y5F8 929 aa4.75□□□□□ -1.65
TRAV28-201ENST00000557548 PAX4O43316 350 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 DNAJA1P31689 397 aaKnown RBP4.74□□□□□ -1.65
TRAV28-201ENST00000557548 GTF2F1P35269 517 aaKnown RBP eCLIP4.74□□□□□ -1.65
TRAV28-201ENST00000557548 PLA2G4AP47712 749 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 RELBQ01201 579 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 GNL2Q13823 731 aaKnown RBP4.74□□□□□ -1.65
TRAV28-201ENST00000557548 FOXD4L6Q3SYB3 417 aaPredicted RBP4.74□□□□□ -1.65
TRAV28-201ENST00000557548 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.74□□□□□ -1.65
TRAV28-201ENST00000557548 C1orf53Q5VUE5 145 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 FOXD4L3Q6VB84 417 aaPredicted RBP4.74□□□□□ -1.65
TRAV28-201ENST00000557548 TTC16Q8NEE8 873 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 NEDD1Q8NHV4 660 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 RHBDD1Q8TEB9 315 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 ITPKCQ96DU7 683 aa4.74□□□□□ -1.65
TRAV28-201ENST00000557548 ZNF395Q9H8N7 513 aaPredicted RBP4.74□□□□□ -1.65
TRAV28-201ENST00000557548 CPNE3O75131 537 aaKnown RBP4.73□□□□□ -1.65
TRAV28-201ENST00000557548 MICAL2O94851 1124 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 ZIC2O95409 532 aaPredicted RBP4.73□□□□□ -1.65
TRAV28-201ENST00000557548 NEFLP07196 543 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 ATP2B1P20020 1258 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 EIF4BP23588 611 aaKnown RBP4.73□□□□□ -1.65
TRAV28-201ENST00000557548 CANXP27824 592 aaKnown RBP4.73□□□□□ -1.65
TRAV28-201ENST00000557548 GTF2E1P29083 439 aaPredicted RBP4.73□□□□□ -1.65
TRAV28-201ENST00000557548 GIMAP6Q6P9H5 292 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 PI16Q6UXB8 463 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 Q6ZVU0 165 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 RHPN1Q8TCX5 695 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 FRMD6Q96NE9 622 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 LNPKQ9C0E8 428 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 DNAJC25Q9H1X3 360 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 ZFAND3Q9H8U3 227 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 NLRP2Q9NX02 1062 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 FOXD3Q9UJU5 478 aaPredicted RBP4.73□□□□□ -1.65
TRAV28-201ENST00000557548 DDX41Q9UJV9 622 aaKnown RBP4.73□□□□□ -1.65
TRAV28-201ENST00000557548 INPP5FQ9Y2H2 1132 aa4.73□□□□□ -1.65
TRAV28-201ENST00000557548 TGFBR3LH3BV60 316 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 RPLP1P05386 114 aaKnown RBP4.72□□□□□ -1.65
TRAV28-201ENST00000557548 TIMP2P16035 220 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 RACK1P63244 317 aaKnown RBP4.72□□□□□ -1.65
TRAV28-201ENST00000557548 C6orf118Q5T5N4 469 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 USPL1Q5W0Q7 1092 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 SV2AQ7L0J3 742 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 HS2ST1Q7LGA3 356 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 USP48Q86UV5 1035 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 EPS8L3Q8TE67 593 aaKnown RBP4.72□□□□□ -1.65
TRAV28-201ENST00000557548 KLRG1Q96E93 195 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 HSH2DQ96JZ2 352 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 C12orf49Q9H741 205 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 FAM13BQ9NYF5 915 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 DNMT3LQ9UJW3 386 aa4.72□□□□□ -1.65
TRAV28-201ENST00000557548 IDH3AP50213 366 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 WDR4P57081 412 aaKnown RBP4.71□□□□□ -1.66
TRAV28-201ENST00000557548 PTSQ03393 145 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.71□□□□□ -1.66
TRAV28-201ENST00000557548 C4orf17Q53FE4 359 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 GNASQ5JWF2 1037 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 SLC27A3Q5K4L6 730 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 MEI1Q5TIA1 1274 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 MCTP1Q6DN14 999 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 ZNF654Q8IZM8 581 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 VWA5B2Q8N398 1253 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 ZNF280CQ8ND82 737 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 CCDC74AQ96AQ1 378 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 AIDAQ96BJ3 306 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 GMLQ99445 158 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 OSBPL7Q9BZF2 842 aa4.71□□□□□ -1.66
TRAV28-201ENST00000557548 CUEDC1Q9NWM3 386 aaPredicted RBP4.71□□□□□ -1.66
TRAV28-201ENST00000557548 GGT7Q9UJ14 662 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms